Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
LMO4P61968 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
LMO4P61968 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 HOMER2P2-201ENST00000451621 847 ntBASIC12.65□□□□□ -0.38
LMO4P61968 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC12.65□□□□□ -0.38
LMO4P61968 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC12.65□□□□□ -0.38
LMO4P61968 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC12.65□□□□□ -0.38
LMO4P61968 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC12.65□□□□□ -0.38
LMO4P61968 KLK3-211ENST00000597483 810 ntTSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 AL354989.2-201ENST00000435838 1540 ntBASIC12.65□□□□□ -0.38
LMO4P61968 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
LMO4P61968 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LMO4P61968 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
LMO4P61968 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.65□□□□□ -0.39
LMO4P61968 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC12.65□□□□□ -0.39
LMO4P61968 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
LMO4P61968 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
LMO4P61968 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
LMO4P61968 BTBD6P1-201ENST00000412176 1267 ntBASIC12.64□□□□□ -0.39
LMO4P61968 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 AC245100.3-201ENST00000441281 285 ntBASIC12.64□□□□□ -0.39
LMO4P61968 CNN2P10-201ENST00000443067 918 ntBASIC12.64□□□□□ -0.39
LMO4P61968 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC12.64□□□□□ -0.39
LMO4P61968 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 ACR-203ENST00000529621 708 ntTSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC12.64□□□□□ -0.39
LMO4P61968 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC12.64□□□□□ -0.39
LMO4P61968 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC12.64□□□□□ -0.39
LMO4P61968 C2orf69P2-201ENST00000562032 1123 ntBASIC12.64□□□□□ -0.39
LMO4P61968 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 AC244093.1-201ENST00000610837 814 ntBASIC12.64□□□□□ -0.39
LMO4P61968 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 AL603764.1-201ENST00000636452 321 ntBASIC12.64□□□□□ -0.39
LMO4P61968 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 DKFZP434H168-201ENST00000567381 1905 ntBASIC12.64□□□□□ -0.39
LMO4P61968 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LMO4P61968 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC12.64□□□□□ -0.39
LMO4P61968 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
LMO4P61968 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC12.63□□□□□ -0.39
LMO4P61968 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
LMO4P61968 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms