Protein–RNA interactions for Protein: P57739

CLDN2, Claudin-2, humanhuman

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN2P57739 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.3■□□□□ 0.04
CLDN2P57739 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.3■□□□□ 0.04
CLDN2P57739 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.3■□□□□ 0.04
CLDN2P57739 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC15.3■□□□□ 0.04
CLDN2P57739 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC15.3■□□□□ 0.04
CLDN2P57739 PAUPAR-201ENST00000630360 2965 ntBASIC15.3■□□□□ 0.04
CLDN2P57739 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.3■□□□□ 0.04
CLDN2P57739 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLDN2P57739 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
CLDN2P57739 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CLDN2P57739 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
CLDN2P57739 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.29■□□□□ 0.04
CLDN2P57739 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CLDN2P57739 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.29■□□□□ 0.04
CLDN2P57739 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 KRT8P35-201ENST00000483942 1338 ntBASIC15.29■□□□□ 0.04
CLDN2P57739 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
CLDN2P57739 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
CLDN2P57739 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.29■□□□□ 0.04
CLDN2P57739 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.29■□□□□ 0.04
CLDN2P57739 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC15.29■□□□□ 0.04
CLDN2P57739 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CLDN2P57739 ACTBP11-201ENST00000436287 1126 ntBASIC15.29■□□□□ 0.04
CLDN2P57739 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.29■□□□□ 0.04
CLDN2P57739 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.29■□□□□ 0.04
CLDN2P57739 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 PACS1-203ENST00000524815 628 ntTSL 4 BASIC15.29■□□□□ 0.04
CLDN2P57739 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.29■□□□□ 0.04
CLDN2P57739 AC025279.2-201ENST00000569730 653 ntBASIC15.29■□□□□ 0.04
CLDN2P57739 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.29■□□□□ 0.04
CLDN2P57739 RHOXF1P1-202ENST00000635473 501 ntBASIC15.29■□□□□ 0.04
CLDN2P57739 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC15.29■□□□□ 0.04
CLDN2P57739 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLDN2P57739 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC15.29■□□□□ 0.04
CLDN2P57739 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.28■□□□□ 0.04
CLDN2P57739 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 RNU1-114P-201ENST00000365297 166 ntBASIC15.28■□□□□ 0.04
CLDN2P57739 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 BRWD1P1-201ENST00000401091 371 ntBASIC15.28■□□□□ 0.04
CLDN2P57739 FAM197Y7-201ENST00000432892 766 ntBASIC15.28■□□□□ 0.04
CLDN2P57739 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.28■□□□□ 0.04
CLDN2P57739 RNA5SP412-201ENST00000516234 123 ntBASIC15.28■□□□□ 0.04
CLDN2P57739 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC15.28■□□□□ 0.04
CLDN2P57739 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLDN2P57739 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 AC009542.2-202ENST00000619004 1067 ntBASIC15.28■□□□□ 0.04
CLDN2P57739 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC15.28■□□□□ 0.04
CLDN2P57739 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLDN2P57739 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms