Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
LIM2P55344 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.76□□□□□ -0.05
LIM2P55344 AC093004.1-201ENST00000508850 424 ntBASIC14.76□□□□□ -0.05
LIM2P55344 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 RARRES2P5-201ENST00000564013 466 ntBASIC14.76□□□□□ -0.05
LIM2P55344 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.76□□□□□ -0.05
LIM2P55344 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.76□□□□□ -0.05
LIM2P55344 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
LIM2P55344 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 AC099063.4-201ENST00000641099 1602 ntBASIC14.76□□□□□ -0.05
LIM2P55344 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.76□□□□□ -0.05
LIM2P55344 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
LIM2P55344 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
LIM2P55344 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
LIM2P55344 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
LIM2P55344 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 MEP1AP4-201ENST00000423244 1087 ntBASIC14.75□□□□□ -0.05
LIM2P55344 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.75□□□□□ -0.05
LIM2P55344 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
LIM2P55344 AC000095.1-201ENST00000603208 874 ntBASIC14.75□□□□□ -0.05
LIM2P55344 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 AC004233.3-201ENST00000607794 1269 ntBASIC14.75□□□□□ -0.05
LIM2P55344 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
LIM2P55344 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 CLK3P2-201ENST00000427566 1453 ntBASIC14.75□□□□□ -0.05
LIM2P55344 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LIM2P55344 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.75□□□□□ -0.05
LIM2P55344 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LIM2P55344 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIM2P55344 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIM2P55344 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
LIM2P55344 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.74□□□□□ -0.05
LIM2P55344 TCAF2P1-201ENST00000291129 2421 ntBASIC14.74□□□□□ -0.05
LIM2P55344 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC14.74□□□□□ -0.05
LIM2P55344 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.74□□□□□ -0.05
LIM2P55344 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.74□□□□□ -0.05
LIM2P55344 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
LIM2P55344 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC14.74□□□□□ -0.05
LIM2P55344 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
LIM2P55344 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LIM2P55344 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms