Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC15.06■□□□□ 0
FOXA1P55317 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 SLED1-202ENST00000512051 380 ntBASIC15.06■□□□□ 0
FOXA1P55317 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC15.06■□□□□ 0
FOXA1P55317 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.06■□□□□ 0
FOXA1P55317 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 AC025048.3-201ENST00000590609 569 ntBASIC15.06■□□□□ 0
FOXA1P55317 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.06■□□□□ 0
FOXA1P55317 AL589739.1-201ENST00000607720 493 ntBASIC15.06■□□□□ 0
FOXA1P55317 AC005702.4-201ENST00000618393 416 ntBASIC15.06■□□□□ 0
FOXA1P55317 AP001059.3-201ENST00000619053 235 ntBASIC15.06■□□□□ 0
FOXA1P55317 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.06■□□□□ 0
FOXA1P55317 AF228730.6-201ENST00000641497 218 ntBASIC15.06■□□□□ 0
FOXA1P55317 AC084121.3-201ENST00000641716 218 ntBASIC15.06■□□□□ 0
FOXA1P55317 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.06■□□□□ 0
FOXA1P55317 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.06■□□□□ 0
FOXA1P55317 AC140479.7-201ENST00000636301 2332 ntBASIC15.06■□□□□ 0
FOXA1P55317 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.06■□□□□ 0
FOXA1P55317 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
FOXA1P55317 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
FOXA1P55317 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.06■□□□□ 0
FOXA1P55317 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
FOXA1P55317 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.05■□□□□ 0
FOXA1P55317 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
FOXA1P55317 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.05■□□□□ 0
FOXA1P55317 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
FOXA1P55317 AC005089.1-201ENST00000619486 2241 ntBASIC15.05■□□□□ 0
FOXA1P55317 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.05■□□□□ 0
FOXA1P55317 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.05■□□□□ 0
FOXA1P55317 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 RPL37AP1-201ENST00000412502 279 ntBASIC15.05■□□□□ -0
FOXA1P55317 GHSR-202ENST00000427970 912 ntBASIC15.05■□□□□ -0
FOXA1P55317 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC15.05■□□□□ -0
FOXA1P55317 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.05■□□□□ -0
FOXA1P55317 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 MIR3687-2-201ENST00000577708 61 ntBASIC15.05■□□□□ -0
FOXA1P55317 AC015910.1-201ENST00000579400 975 ntBASIC15.05■□□□□ -0
FOXA1P55317 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.05■□□□□ -0
FOXA1P55317 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
FOXA1P55317 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 MIR3687-1-201ENST00000614492 61 ntBASIC15.05■□□□□ -0
FOXA1P55317 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.05■□□□□ -0
FOXA1P55317 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
FOXA1P55317 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
FOXA1P55317 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
FOXA1P55317 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
FOXA1P55317 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.05■□□□□ -0
FOXA1P55317 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.05■□□□□ -0
FOXA1P55317 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.05■□□□□ -0
FOXA1P55317 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.05■□□□□ -0
FOXA1P55317 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.05■□□□□ -0
FOXA1P55317 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
FOXA1P55317 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
FOXA1P55317 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.04■□□□□ -0
FOXA1P55317 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms