Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL390755.1-201ENST00000623716 2027 ntBASIC16.46■□□□□ 0.23
LIG3P49916 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.46■□□□□ 0.23
LIG3P49916 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.46■□□□□ 0.23
LIG3P49916 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
LIG3P49916 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.46■□□□□ 0.23
LIG3P49916 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.46■□□□□ 0.23
LIG3P49916 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.46■□□□□ 0.23
LIG3P49916 SPDYE14P-201ENST00000442619 822 ntBASIC16.46■□□□□ 0.23
LIG3P49916 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.46■□□□□ 0.23
LIG3P49916 CYMP-203ENST00000474680 1263 ntBASIC16.46■□□□□ 0.23
LIG3P49916 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC16.46■□□□□ 0.23
LIG3P49916 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.46■□□□□ 0.23
LIG3P49916 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 AL512356.2-201ENST00000546955 174 ntBASIC16.46■□□□□ 0.23
LIG3P49916 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.46■□□□□ 0.23
LIG3P49916 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
LIG3P49916 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.46■□□□□ 0.23
LIG3P49916 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.46■□□□□ 0.23
LIG3P49916 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
LIG3P49916 AC097376.2-205ENST00000610159 5334 ntBASIC16.46■□□□□ 0.22
LIG3P49916 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
LIG3P49916 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.46■□□□□ 0.22
LIG3P49916 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
LIG3P49916 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 FOXO1B-201ENST00000504678 1527 ntBASIC16.45■□□□□ 0.22
LIG3P49916 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 AC007326.2-201ENST00000624224 7579 ntBASIC16.45■□□□□ 0.22
LIG3P49916 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 ARHGAP23P1-201ENST00000562773 1937 ntBASIC16.45■□□□□ 0.22
LIG3P49916 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 AL359183.1-201ENST00000623796 2132 ntBASIC16.45■□□□□ 0.22
LIG3P49916 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.45■□□□□ 0.22
LIG3P49916 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
LIG3P49916 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.45■□□□□ 0.22
LIG3P49916 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.45■□□□□ 0.22
LIG3P49916 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC16.45■□□□□ 0.22
LIG3P49916 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.45■□□□□ 0.22
LIG3P49916 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.45■□□□□ 0.22
LIG3P49916 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
LIG3P49916 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms