Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 NCKAP5L-201ENST00000335999 4900 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 SLC4A1APP2-201ENST00000424054 1259 ntBASIC13.01□□□□□ -0.33
HOXA1P49639 FAM185BP-201ENST00000443595 716 ntBASIC13.01□□□□□ -0.33
HOXA1P49639 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 AF186996.4-201ENST00000467186 377 ntBASIC13.01□□□□□ -0.33
HOXA1P49639 SDHD-206ENST00000528182 754 ntTSL 3 BASIC13.01□□□□□ -0.33
HOXA1P49639 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC13.01□□□□□ -0.33
HOXA1P49639 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC13.01□□□□□ -0.33
HOXA1P49639 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
HOXA1P49639 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 PCDHB5-201ENST00000231134 3408 ntAPPRIS P1 BASIC13□□□□□ -0.33
HOXA1P49639 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13□□□□□ -0.33
HOXA1P49639 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 AC136621.1-201ENST00000624017 2304 ntBASIC13□□□□□ -0.33
HOXA1P49639 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 AC008677.1-201ENST00000519230 1561 ntBASIC13□□□□□ -0.33
HOXA1P49639 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13□□□□□ -0.33
HOXA1P49639 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 METTL26-205ENST00000397666 726 ntTSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 HMGA1P7-201ENST00000406908 502 ntBASIC13□□□□□ -0.33
HOXA1P49639 FIS1-203ENST00000442303 631 ntTSL 3 BASIC13□□□□□ -0.33
HOXA1P49639 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC13□□□□□ -0.33
HOXA1P49639 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC13□□□□□ -0.33
HOXA1P49639 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC13□□□□□ -0.33
HOXA1P49639 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
HOXA1P49639 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
HOXA1P49639 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms