Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
COL18A1P39060 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC19.93■□□□□ 0.78
COL18A1P39060 AC114501.1-201ENST00000445949 172 ntBASIC19.93■□□□□ 0.78
COL18A1P39060 KRT18P66-201ENST00000452970 1269 ntBASIC19.93■□□□□ 0.78
COL18A1P39060 IGHV3-37-201ENST00000518544 340 ntBASIC19.93■□□□□ 0.78
COL18A1P39060 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC19.93■□□□□ 0.78
COL18A1P39060 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC19.93■□□□□ 0.78
COL18A1P39060 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC19.93■□□□□ 0.78
COL18A1P39060 HPN-206ENST00000597419 1212 ntTSL 5 BASIC19.93■□□□□ 0.78
COL18A1P39060 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC19.93■□□□□ 0.78
COL18A1P39060 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.93■□□□□ 0.78
COL18A1P39060 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
COL18A1P39060 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC19.93■□□□□ 0.78
COL18A1P39060 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC19.93■□□□□ 0.78
COL18A1P39060 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC19.93■□□□□ 0.78
COL18A1P39060 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC19.93■□□□□ 0.78
COL18A1P39060 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL18A1P39060 AC136759.1-202ENST00000530858 2194 ntBASIC19.93■□□□□ 0.78
COL18A1P39060 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.92■□□□□ 0.78
COL18A1P39060 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 FZD10-202ENST00000539839 3282 ntBASIC19.92■□□□□ 0.78
COL18A1P39060 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC19.92■□□□□ 0.78
COL18A1P39060 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC19.92■□□□□ 0.78
COL18A1P39060 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC19.92■□□□□ 0.78
COL18A1P39060 FOS-204ENST00000554617 796 ntTSL 2 BASIC19.92■□□□□ 0.78
COL18A1P39060 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC19.92■□□□□ 0.78
COL18A1P39060 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL18A1P39060 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC19.92■□□□□ 0.78
COL18A1P39060 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.91■□□□□ 0.78
COL18A1P39060 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
COL18A1P39060 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.91■□□□□ 0.78
COL18A1P39060 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 CICP11-201ENST00000434745 2827 ntBASIC19.91■□□□□ 0.78
COL18A1P39060 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC19.91■□□□□ 0.78
COL18A1P39060 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 TLE1P1-201ENST00000422965 589 ntBASIC19.91■□□□□ 0.78
COL18A1P39060 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC19.91■□□□□ 0.78
COL18A1P39060 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 MIR6842-201ENST00000612539 65 ntBASIC19.91■□□□□ 0.78
COL18A1P39060 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
COL18A1P39060 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL18A1P39060 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
COL18A1P39060 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL18A1P39060 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC19.91■□□□□ 0.78
COL18A1P39060 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.91■□□□□ 0.78
COL18A1P39060 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC19.9■□□□□ 0.78
COL18A1P39060 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.9■□□□□ 0.78
COL18A1P39060 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
COL18A1P39060 NAGK-204ENST00000443872 878 ntTSL 3 BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms