Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AC023141.5-201ENST00000458585 616 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AL355385.1-201ENST00000606123 409 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 OR2I1P-210ENST00000642037 4691 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AL009178.2-201ENST00000597278 2719 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 CICP23-201ENST00000605013 2741 ntBASIC11.92□□□□□ -0.5
HLA-DMBP28068 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
HLA-DMBP28068 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
HLA-DMBP28068 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 CD81-202ENST00000381036 880 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 PNMT-202ENST00000394246 821 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 AL645939.2-201ENST00000427340 991 ntBASIC11.91□□□□□ -0.5
HLA-DMBP28068 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 DAD1-205ENST00000543337 501 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 AC026979.3-201ENST00000607315 403 ntBASIC11.91□□□□□ -0.5
HLA-DMBP28068 AC106028.4-201ENST00000614509 607 ntBASIC11.91□□□□□ -0.5
HLA-DMBP28068 AC093028.1-201ENST00000622998 982 ntBASIC11.91□□□□□ -0.5
HLA-DMBP28068 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 MARS-233ENST00000628866 2583 ntTSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
HLA-DMBP28068 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
HLA-DMBP28068 AC126365.1-201ENST00000578585 1514 ntBASIC11.91□□□□□ -0.5
HLA-DMBP28068 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms