Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL11A1P12107 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.28■□□□□ 0.36
COL11A1P12107 MIR769-201ENST00000390225 118 ntBASIC17.28■□□□□ 0.36
COL11A1P12107 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL11A1P12107 HLA-J-204ENST00000495278 958 ntBASIC17.28■□□□□ 0.36
COL11A1P12107 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.28■□□□□ 0.36
COL11A1P12107 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.28■□□□□ 0.36
COL11A1P12107 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC17.28■□□□□ 0.36
COL11A1P12107 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.28■□□□□ 0.36
COL11A1P12107 AC005324.6-201ENST00000587972 613 ntBASIC17.28■□□□□ 0.36
COL11A1P12107 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.28■□□□□ 0.36
COL11A1P12107 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL11A1P12107 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL11A1P12107 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.27■□□□□ 0.36
COL11A1P12107 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL11A1P12107 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.27■□□□□ 0.36
COL11A1P12107 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL11A1P12107 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC17.27■□□□□ 0.36
COL11A1P12107 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
COL11A1P12107 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
COL11A1P12107 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL11A1P12107 RN7SL11P-201ENST00000471305 293 ntBASIC17.27■□□□□ 0.36
COL11A1P12107 AC106794.1-201ENST00000506935 792 ntBASIC17.27■□□□□ 0.36
COL11A1P12107 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC17.27■□□□□ 0.36
COL11A1P12107 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC17.27■□□□□ 0.36
COL11A1P12107 FGFR3P5-201ENST00000564496 886 ntBASIC17.27■□□□□ 0.36
COL11A1P12107 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC17.27■□□□□ 0.36
COL11A1P12107 AC138696.2-201ENST00000607376 223 ntBASIC17.27■□□□□ 0.36
COL11A1P12107 AC090164.2-201ENST00000611487 516 ntBASIC17.27■□□□□ 0.36
COL11A1P12107 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL11A1P12107 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
COL11A1P12107 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL11A1P12107 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC17.27■□□□□ 0.35
COL11A1P12107 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC17.27■□□□□ 0.35
COL11A1P12107 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.27■□□□□ 0.35
COL11A1P12107 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.27■□□□□ 0.35
COL11A1P12107 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL11A1P12107 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL11A1P12107 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL11A1P12107 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL11A1P12107 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
COL11A1P12107 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
COL11A1P12107 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL11A1P12107 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.26■□□□□ 0.35
COL11A1P12107 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 AC245884.6-201ENST00000515672 1067 ntBASIC17.26■□□□□ 0.35
COL11A1P12107 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
COL11A1P12107 BNIP3P13-201ENST00000599968 566 ntBASIC17.26■□□□□ 0.35
COL11A1P12107 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC17.26■□□□□ 0.35
COL11A1P12107 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL11A1P12107 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
COL11A1P12107 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
COL11A1P12107 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.26■□□□□ 0.35
COL11A1P12107 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.26■□□□□ 0.35
COL11A1P12107 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.26■□□□□ 0.35
COL11A1P12107 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
COL11A1P12107 AL662890.1-201ENST00000396818 632 ntBASIC17.26■□□□□ 0.35
COL11A1P12107 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC17.26■□□□□ 0.35
COL11A1P12107 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC17.26■□□□□ 0.35
COL11A1P12107 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC17.26■□□□□ 0.35
COL11A1P12107 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC17.26■□□□□ 0.35
COL11A1P12107 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC17.26■□□□□ 0.35
COL11A1P12107 AL023803.2-201ENST00000620080 638 ntBASIC17.26■□□□□ 0.35
COL11A1P12107 CDK7-214ENST00000626796 358 ntTSL 5 BASIC17.26■□□□□ 0.35
COL11A1P12107 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC17.26■□□□□ 0.35
COL11A1P12107 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
COL11A1P12107 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
COL11A1P12107 AL137783.1-201ENST00000623494 1896 ntBASIC17.25■□□□□ 0.35
COL11A1P12107 AC020910.5-201ENST00000623668 1865 ntBASIC17.25■□□□□ 0.35
COL11A1P12107 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
COL11A1P12107 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms