Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.16□□□□□ -0.14
HOXD4P09016 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.16□□□□□ -0.14
HOXD4P09016 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXD4P09016 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXD4P09016 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 AL450472.2-201ENST00000603663 1156 ntBASIC14.16□□□□□ -0.14
HOXD4P09016 AC133539.2-201ENST00000604757 467 ntBASIC14.16□□□□□ -0.14
HOXD4P09016 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXD4P09016 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.16□□□□□ -0.14
HOXD4P09016 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXD4P09016 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 BOLA2P3-201ENST00000404566 256 ntBASIC14.15□□□□□ -0.14
HOXD4P09016 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.15□□□□□ -0.14
HOXD4P09016 AL162726.2-201ENST00000438986 1017 ntBASIC14.15□□□□□ -0.14
HOXD4P09016 TARDBPP1-201ENST00000442013 1203 ntBASIC14.15□□□□□ -0.14
HOXD4P09016 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.15□□□□□ -0.14
HOXD4P09016 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.15□□□□□ -0.14
HOXD4P09016 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 ENPP7P5-201ENST00000541031 1031 ntBASIC14.15□□□□□ -0.14
HOXD4P09016 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.15□□□□□ -0.14
HOXD4P09016 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC14.15□□□□□ -0.14
HOXD4P09016 WFDC1-204ENST00000613603 549 ntBASIC14.15□□□□□ -0.14
HOXD4P09016 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 AL359183.1-201ENST00000623796 2132 ntBASIC14.15□□□□□ -0.14
HOXD4P09016 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
HOXD4P09016 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.15□□□□□ -0.14
HOXD4P09016 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
HOXD4P09016 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
HOXD4P09016 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.14□□□□□ -0.15
HOXD4P09016 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms