Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.23■□□□□ 0.51
HLA-DOAP06340 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HLA-DOAP06340 LINC02199-201ENST00000506655 2702 ntBASIC18.22■□□□□ 0.51
HLA-DOAP06340 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 RPL5P21-201ENST00000404620 815 ntBASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC022494.1-201ENST00000466044 728 ntBASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 RNA5SP486-201ENST00000515961 83 ntBASIC18.22■□□□□ 0.51
HLA-DOAP06340 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC009542.2-202ENST00000619004 1067 ntBASIC18.22■□□□□ 0.51
HLA-DOAP06340 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HLA-DOAP06340 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HLA-DOAP06340 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 AL139094.1-201ENST00000405549 1188 ntBASIC18.21■□□□□ 0.51
HLA-DOAP06340 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 AC148477.4-201ENST00000613430 1793 ntBASIC18.21■□□□□ 0.51
HLA-DOAP06340 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HLA-DOAP06340 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 AHCYP2-201ENST00000430630 1300 ntBASIC18.21■□□□□ 0.51
HLA-DOAP06340 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC18.21■□□□□ 0.51
HLA-DOAP06340 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
HLA-DOAP06340 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
HLA-DOAP06340 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.21■□□□□ 0.5
HLA-DOAP06340 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 AL158070.2-201ENST00000623713 1621 ntBASIC18.2■□□□□ 0.5
HLA-DOAP06340 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC18.2■□□□□ 0.5
HLA-DOAP06340 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HLA-DOAP06340 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms