Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 CLUHP2-201ENST00000426660 1303 ntBASIC16.26■□□□□ 0.19
SOX1O00570 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX1O00570 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX1O00570 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 AL583805.1-201ENST00000391389 531 ntBASIC16.26■□□□□ 0.19
SOX1O00570 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX1O00570 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX1O00570 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX1O00570 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX1O00570 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC16.26■□□□□ 0.19
SOX1O00570 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX1O00570 AC021016.3-201ENST00000608367 477 ntBASIC16.26■□□□□ 0.19
SOX1O00570 AL451007.2-201ENST00000632004 563 ntBASIC16.26■□□□□ 0.19
SOX1O00570 AL645728.2-202ENST00000641679 227 ntBASIC16.26■□□□□ 0.19
SOX1O00570 USP4-203ENST00000415188 1454 ntTSL 3 BASIC16.26■□□□□ 0.19
SOX1O00570 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 AC008764.6-201ENST00000595909 2069 ntBASIC16.26■□□□□ 0.19
SOX1O00570 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.26■□□□□ 0.19
SOX1O00570 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
SOX1O00570 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
SOX1O00570 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.26■□□□□ 0.19
SOX1O00570 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
SOX1O00570 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 AP000358.1-201ENST00000456260 156 ntBASIC16.25■□□□□ 0.19
SOX1O00570 HNRNPA1P42-201ENST00000458678 957 ntBASIC16.25■□□□□ 0.19
SOX1O00570 CR383656.3-201ENST00000551315 183 ntBASIC16.25■□□□□ 0.19
SOX1O00570 AC027237.1-201ENST00000560942 655 ntBASIC16.25■□□□□ 0.19
SOX1O00570 MIR6769A-201ENST00000617340 73 ntBASIC16.25■□□□□ 0.19
SOX1O00570 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX1O00570 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
SOX1O00570 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 AC018892.3-201ENST00000623986 2499 ntBASIC16.25■□□□□ 0.19
SOX1O00570 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 MBLAC2-202ENST00000514906 1936 ntBASIC16.25■□□□□ 0.19
SOX1O00570 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
SOX1O00570 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 FAM90A7P-201ENST00000382628 1395 ntBASIC16.25■□□□□ 0.19
SOX1O00570 FAM90A23P-201ENST00000400136 1395 ntBASIC16.25■□□□□ 0.19
SOX1O00570 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.25■□□□□ 0.19
SOX1O00570 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
SOX1O00570 PCDHB18P-201ENST00000524813 2368 ntBASIC16.24■□□□□ 0.19
SOX1O00570 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.24■□□□□ 0.19
SOX1O00570 AP001282.1-201ENST00000531301 1499 ntBASIC16.24■□□□□ 0.19
SOX1O00570 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SOX1O00570 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.24■□□□□ 0.19
SOX1O00570 HLA-DPA2-205ENST00000433582 733 ntBASIC16.24■□□□□ 0.19
SOX1O00570 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 AL645933.1-201ENST00000440087 609 ntBASIC16.24■□□□□ 0.19
SOX1O00570 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC16.24■□□□□ 0.19
SOX1O00570 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC16.24■□□□□ 0.19
SOX1O00570 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC16.24■□□□□ 0.19
SOX1O00570 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC16.24■□□□□ 0.19
SOX1O00570 NUDT4P2-201ENST00000578341 546 ntBASIC16.24■□□□□ 0.19
SOX1O00570 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.24■□□□□ 0.19
SOX1O00570 AC004466.1-201ENST00000599515 1080 ntBASIC16.24■□□□□ 0.19
SOX1O00570 AL353622.2-201ENST00000605846 425 ntBASIC16.24■□□□□ 0.19
SOX1O00570 HMGB1P24-201ENST00000611897 328 ntBASIC16.24■□□□□ 0.19
SOX1O00570 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
SOX1O00570 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms