Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HADH-212ENST00000638621 741 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CCDC39Q9UFE4 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 RPSAP43-201ENST00000402237 625 ntBASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AP000344.2-201ENST00000512987 629 ntBASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 MAX-210ENST00000555419 765 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC18.1■□□□□ 0.49
CCDC39Q9UFE4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 AC004987.2-201ENST00000395959 1148 ntBASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 AC004461.1-201ENST00000412461 403 ntBASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 KRT18P32-201ENST00000424695 1287 ntBASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 AL139010.1-201ENST00000454878 894 ntBASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 RARRES2P9-201ENST00000565168 469 ntBASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 AC026979.3-201ENST00000607315 403 ntBASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC18.09■□□□□ 0.49
CCDC39Q9UFE4 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
CCDC39Q9UFE4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms