Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 AC119751.2-201ENST00000504529 210 ntBASIC16.66■□□□□ 0.26
CNTN3Q9P232 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.66■□□□□ 0.26
CNTN3Q9P232 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CNTN3Q9P232 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 ANKRD19P-201ENST00000338192 862 ntBASIC16.65■□□□□ 0.26
CNTN3Q9P232 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 AC004066.1-201ENST00000502488 802 ntBASIC16.65■□□□□ 0.26
CNTN3Q9P232 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 GNRHR2-203ENST00000581100 1187 ntBASIC16.65■□□□□ 0.26
CNTN3Q9P232 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 PRSS30P-206ENST00000641773 873 ntBASIC16.65■□□□□ 0.26
CNTN3Q9P232 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.65■□□□□ 0.26
CNTN3Q9P232 PDIA3P1-201ENST00000471856 1510 ntBASIC16.65■□□□□ 0.26
CNTN3Q9P232 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CNTN3Q9P232 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CNTN3Q9P232 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CNTN3Q9P232 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.64■□□□□ 0.26
CNTN3Q9P232 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CNTN3Q9P232 AC007787.1-201ENST00000588095 1583 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 MIR658-201ENST00000385210 100 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 AL645937.2-201ENST00000396808 931 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 AC104457.1-201ENST00000401024 814 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 NUS1P3-201ENST00000423502 862 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 MIR6775-201ENST00000617557 69 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.64■□□□□ 0.25
CNTN3Q9P232 AC020658.6-201ENST00000623564 1870 ntBASIC16.64■□□□□ 0.25
CNTN3Q9P232 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CNTN3Q9P232 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms