Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PTCHD1Q96NR3 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AC127383.1-201ENST00000444697 1800 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AP002414.2-201ENST00000591780 3365 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AL133267.1-201ENST00000398220 340 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 FAM86LP-201ENST00000478302 853 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 MIR8072-201ENST00000614241 80 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AC105233.6-201ENST00000642093 218 ntBASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.69□□□□□ -0.06
PTCHD1Q96NR3 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AC073347.1-201ENST00000421633 2643 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 DGCR5-201ENST00000399539 862 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AP005018.1-201ENST00000525475 301 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AL358472.5-202ENST00000641448 1267 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 AC092384.3-202ENST00000564646 2873 ntBASIC14.68□□□□□ -0.06
PTCHD1Q96NR3 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms