Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AC104640.1-201ENST00000562617 2109 ntBASIC14.51□□□□□ -0.09
BEST3Q8N1M1 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.51□□□□□ -0.09
BEST3Q8N1M1 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 AL365203.3-201ENST00000609742 2057 ntBASIC14.5□□□□□ -0.09
BEST3Q8N1M1 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 AL442647.2-201ENST00000429864 857 ntBASIC14.5□□□□□ -0.09
BEST3Q8N1M1 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 AL162274.1-201ENST00000617191 1098 ntBASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
BEST3Q8N1M1 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AC011477.6-201ENST00000604980 1927 ntBASIC14.49□□□□□ -0.09
BEST3Q8N1M1 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.49□□□□□ -0.09
BEST3Q8N1M1 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 KRT17P8-201ENST00000540749 863 ntBASIC14.49□□□□□ -0.09
BEST3Q8N1M1 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AC010319.3-201ENST00000597028 470 ntBASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AC133539.2-201ENST00000604757 467 ntBASIC14.49□□□□□ -0.09
BEST3Q8N1M1 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
BEST3Q8N1M1 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
BEST3Q8N1M1 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms