Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 NAV1-203ENST00000367302 9685 ntTSL 5 BASIC9.65□□□□□ -0.86
LINC00643Q86TS7 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 EXOC7-216ENST00000589210 4751 ntAPPRIS ALT1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 AC012531.1-201ENST00000562848 2680 ntBASIC9.65□□□□□ -0.87
LINC00643Q86TS7 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 ZNF142-205ENST00000449707 5909 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 KIAA0319-205ENST00000543707 5314 ntAPPRIS P3 TSL 5 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 ERI1-209ENST00000523898 5036 ntAPPRIS P1 TSL 5 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 POLDIP3-209ENST00000617178 2006 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 CEACAM20-204ENST00000617951 2034 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 CAMTA2-204ENST00000414043 4589 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
LINC00643Q86TS7 CCDC144NL-201ENST00000327925 2806 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC018529.2-202ENST00000611482 3087 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 OTOF-204ENST00000402415 5108 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AP000437.1-201ENST00000624057 2085 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 MIR939-201ENST00000401314 82 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SAPCD2P2-201ENST00000431719 1174 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC123595.1-201ENST00000440769 1046 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC093787.1-201ENST00000450396 207 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 UBE2SP1-201ENST00000450587 669 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 EHF-205ENST00000527935 557 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC010336.1-201ENST00000539278 4739 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 AC005622.1-201ENST00000636801 1703 ntBASIC9.64□□□□□ -0.87
LINC00643Q86TS7 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SMIM10L1-201ENST00000622602 4795 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 MAGEL2-201ENST00000532292 4298 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 GFRA1-204ENST00000439649 9216 ntAPPRIS P3 TSL 2 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC9.64□□□□□ -0.87
LINC00643Q86TS7 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms