Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.8■□□□□ 0.28
KRT39Q6A163 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
KRT39Q6A163 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 NORAD-201ENST00000565493 5339 ntBASIC16.8■□□□□ 0.28
KRT39Q6A163 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.8■□□□□ 0.28
KRT39Q6A163 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
KRT39Q6A163 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
KRT39Q6A163 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.79■□□□□ 0.28
KRT39Q6A163 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.79■□□□□ 0.28
KRT39Q6A163 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 SPDYE19P-201ENST00000338590 713 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 MEP1AP4-201ENST00000423244 1087 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.79■□□□□ 0.28
KRT39Q6A163 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.79■□□□□ 0.28
KRT39Q6A163 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 AC023310.3-201ENST00000557027 670 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 AC100756.1-201ENST00000562736 682 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 AC138749.3-201ENST00000567691 622 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
KRT39Q6A163 AC116165.1-201ENST00000611806 668 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 AL645728.2-202ENST00000641679 227 ntBASIC16.79■□□□□ 0.28
KRT39Q6A163 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
KRT39Q6A163 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
KRT39Q6A163 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
KRT39Q6A163 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.79■□□□□ 0.28
KRT39Q6A163 DBET-201ENST00000630918 3363 ntBASIC16.78■□□□□ 0.28
KRT39Q6A163 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 GNAQP1-201ENST00000444815 1067 ntBASIC16.78■□□□□ 0.28
KRT39Q6A163 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.78■□□□□ 0.28
KRT39Q6A163 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.78■□□□□ 0.28
KRT39Q6A163 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 AC036164.1-201ENST00000570544 333 ntBASIC16.78■□□□□ 0.28
KRT39Q6A163 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC16.78■□□□□ 0.28
KRT39Q6A163 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC16.78■□□□□ 0.28
KRT39Q6A163 MST1L-201ENST00000442552 2185 ntBASIC16.78■□□□□ 0.28
KRT39Q6A163 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
KRT39Q6A163 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
KRT39Q6A163 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.78■□□□□ 0.28
KRT39Q6A163 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms