Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 IGHV3-37-201ENST00000518544 340 ntBASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 RBM8B-201ENST00000555532 525 ntBASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 CENPX-208ENST00000584347 799 ntTSL 2 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AC005324.6-201ENST00000587972 613 ntBASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
CCDC88AQ3V6T2 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 AC004066.1-201ENST00000502488 802 ntBASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 AC012044.1-201ENST00000603431 297 ntBASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 AC010491.1-201ENST00000563101 2797 ntBASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CCDC88AQ3V6T2 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 HLA-J-204ENST00000495278 958 ntBASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AC138894.2-201ENST00000602838 371 ntBASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 RN7SKP214-201ENST00000364208 315 ntBASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 AC078991.1-201ENST00000437297 610 ntBASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CCDC88AQ3V6T2 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88AQ3V6T2 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.64■□□□□ 0.58
CCDC88AQ3V6T2 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.64■□□□□ 0.58
CCDC88AQ3V6T2 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88AQ3V6T2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88AQ3V6T2 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
CCDC88AQ3V6T2 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 AC073150.1-201ENST00000450406 1084 ntBASIC18.64■□□□□ 0.57
CCDC88AQ3V6T2 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 66.7 ms