Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 NME6-203ENST00000415644 849 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC006033.1-201ENST00000440505 426 ntBASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 IGHV3OR16-16-201ENST00000563644 343 ntBASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 AL139099.5-201ENST00000635274 300 ntBASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 CICP11-201ENST00000434745 2827 ntBASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 REXO1L5P-201ENST00000622260 2098 ntBASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
SHROOM1Q2M3G4 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 CNN2P10-201ENST00000443067 918 ntBASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 AC026691.1-201ENST00000602502 2017 ntBASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 AL354989.2-201ENST00000435838 1540 ntBASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
SHROOM1Q2M3G4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 HLA-K-203ENST00000430151 1046 ntBASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.97■□□□□ 0.47
SHROOM1Q2M3G4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms