Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HDAC4P56524 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 MIR770-201ENST00000390219 98 ntBASIC16.29■□□□□ 0.2
HDAC4P56524 AL133267.1-201ENST00000398220 340 ntBASIC16.29■□□□□ 0.2
HDAC4P56524 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
HDAC4P56524 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.29■□□□□ 0.2
HDAC4P56524 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 SRD5A3P1-201ENST00000603021 949 ntBASIC16.29■□□□□ 0.2
HDAC4P56524 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.29■□□□□ 0.2
HDAC4P56524 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 AL121723.1-201ENST00000445194 1519 ntBASIC16.29■□□□□ 0.2
HDAC4P56524 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
HDAC4P56524 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HDAC4P56524 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.28■□□□□ 0.2
HDAC4P56524 AC006486.2-201ENST00000624246 2199 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 KRT8P44-201ENST00000441609 1350 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
HDAC4P56524 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.28■□□□□ 0.2
HDAC4P56524 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 AC099063.4-201ENST00000641099 1602 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC4P56524 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.28■□□□□ 0.2
HDAC4P56524 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC4P56524 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HDAC4P56524 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC4P56524 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.28■□□□□ 0.2
HDAC4P56524 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
HDAC4P56524 TIMM17BP1-201ENST00000545713 516 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
HDAC4P56524 AC104794.3-201ENST00000566840 1248 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
HDAC4P56524 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.28■□□□□ 0.2
HDAC4P56524 AL391069.4-201ENST00000609583 481 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.28■□□□□ 0.2
HDAC4P56524 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 AC138969.3-201ENST00000546612 1459 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 AC138932.2-201ENST00000548268 1459 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 AC126755.4-201ENST00000549796 1459 ntBASIC16.28■□□□□ 0.2
HDAC4P56524 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HDAC4P56524 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.2
HDAC4P56524 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
HDAC4P56524 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.27■□□□□ 0.2
HDAC4P56524 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.27■□□□□ 0.2
HDAC4P56524 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.27■□□□□ 0.2
HDAC4P56524 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HDAC4P56524 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.27■□□□□ 0.2
HDAC4P56524 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
HDAC4P56524 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC4P56524 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.27■□□□□ 0.2
HDAC4P56524 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.27■□□□□ 0.2
HDAC4P56524 KRT18P43-201ENST00000469825 1281 ntBASIC16.27■□□□□ 0.2
HDAC4P56524 RNA5SP421-201ENST00000516864 134 ntBASIC16.27■□□□□ 0.2
HDAC4P56524 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.27■□□□□ 0.2
HDAC4P56524 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms