Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SOX2P48431 AL359258.3-201ENST00000622910 2331 ntBASIC13.79□□□□□ -0.2
SOX2P48431 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SOX2P48431 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
SOX2P48431 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 AC026396.1-201ENST00000419388 421 ntBASIC13.78□□□□□ -0.2
SOX2P48431 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 FAAHP1-202ENST00000446499 1238 ntBASIC13.78□□□□□ -0.2
SOX2P48431 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 AC112191.1-201ENST00000523689 701 ntBASIC13.78□□□□□ -0.2
SOX2P48431 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.78□□□□□ -0.2
SOX2P48431 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 AC099522.2-201ENST00000607001 744 ntBASIC13.78□□□□□ -0.2
SOX2P48431 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC13.78□□□□□ -0.2
SOX2P48431 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC13.78□□□□□ -0.2
SOX2P48431 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SOX2P48431 MROH4P-201ENST00000431302 1578 ntBASIC13.78□□□□□ -0.2
SOX2P48431 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
SOX2P48431 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
SOX2P48431 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SOX2P48431 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX2P48431 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX2P48431 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.77□□□□□ -0.2
SOX2P48431 AC007191.1-201ENST00000623179 2995 ntBASIC13.77□□□□□ -0.2
SOX2P48431 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.77□□□□□ -0.2
SOX2P48431 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX2P48431 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX2P48431 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SOX2P48431 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SOX2P48431 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC13.77□□□□□ -0.21
SOX2P48431 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.77□□□□□ -0.21
SOX2P48431 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX2P48431 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.77□□□□□ -0.21
SOX2P48431 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SOX2P48431 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms