Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 AC008761.3-201ENST00000624803 892 ntBASIC16.15■□□□□ 0.18
PTPN9P43378 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
PTPN9P43378 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.15■□□□□ 0.18
PTPN9P43378 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
PTPN9P43378 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
PTPN9P43378 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
PTPN9P43378 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
PTPN9P43378 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 AL391825.1-201ENST00000457671 1364 ntBASIC16.14■□□□□ 0.17
PTPN9P43378 WASH3P-207ENST00000560956 1394 ntBASIC16.14■□□□□ 0.17
PTPN9P43378 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PTPN9P43378 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
PTPN9P43378 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 DRD5P1-201ENST00000456605 1438 ntBASIC16.14■□□□□ 0.17
PTPN9P43378 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PTPN9P43378 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
PTPN9P43378 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 AC026410.3-201ENST00000514280 936 ntBASIC16.14■□□□□ 0.17
PTPN9P43378 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN9P43378 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN9P43378 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.14■□□□□ 0.17
PTPN9P43378 BRI3BPP1-201ENST00000594224 787 ntBASIC16.14■□□□□ 0.17
PTPN9P43378 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.14■□□□□ 0.17
PTPN9P43378 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PTPN9P43378 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTPN9P43378 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.13■□□□□ 0.17
PTPN9P43378 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 AC002472.2-201ENST00000442739 958 ntBASIC16.13■□□□□ 0.17
PTPN9P43378 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.13■□□□□ 0.17
PTPN9P43378 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.13■□□□□ 0.17
PTPN9P43378 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PTPN9P43378 AL049840.4-201ENST00000602422 811 ntBASIC16.13■□□□□ 0.17
PTPN9P43378 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.13■□□□□ 0.17
PTPN9P43378 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.13■□□□□ 0.17
PTPN9P43378 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.13■□□□□ 0.17
PTPN9P43378 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTPN9P43378 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.12■□□□□ 0.17
PTPN9P43378 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTPN9P43378 AC091951.1-201ENST00000512854 2465 ntBASIC16.12■□□□□ 0.17
PTPN9P43378 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.12■□□□□ 0.17
PTPN9P43378 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms