Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC19.31■□□□□ 0.68
RFC4P35249 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
RFC4P35249 AC124067.4-201ENST00000519691 2379 ntBASIC19.31■□□□□ 0.68
RFC4P35249 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC19.31■□□□□ 0.68
RFC4P35249 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC19.31■□□□□ 0.68
RFC4P35249 AC104073.2-201ENST00000453737 312 ntBASIC19.31■□□□□ 0.68
RFC4P35249 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC19.31■□□□□ 0.68
RFC4P35249 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC19.31■□□□□ 0.68
RFC4P35249 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC19.31■□□□□ 0.68
RFC4P35249 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC19.31■□□□□ 0.68
RFC4P35249 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 AL603764.1-201ENST00000636452 321 ntBASIC19.31■□□□□ 0.68
RFC4P35249 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
RFC4P35249 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
RFC4P35249 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 CA12-203ENST00000422263 2556 ntTSL 2 BASIC19.31■□□□□ 0.68
RFC4P35249 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
RFC4P35249 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
RFC4P35249 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
RFC4P35249 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RFC4P35249 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
RFC4P35249 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
RFC4P35249 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC4P35249 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC4P35249 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 UFM1-202ENST00000379649 846 ntTSL 4 BASIC19.3■□□□□ 0.68
RFC4P35249 SLC16A6P1-201ENST00000413214 1059 ntBASIC19.3■□□□□ 0.68
RFC4P35249 AC069218.1-201ENST00000435269 762 ntBASIC19.3■□□□□ 0.68
RFC4P35249 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC4P35249 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC19.3■□□□□ 0.68
RFC4P35249 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC4P35249 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.3■□□□□ 0.68
RFC4P35249 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC19.3■□□□□ 0.68
RFC4P35249 AF254983.2-201ENST00000612331 135 ntBASIC19.3■□□□□ 0.68
RFC4P35249 AC138466.3-201ENST00000619983 221 ntBASIC19.3■□□□□ 0.68
RFC4P35249 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.3■□□□□ 0.68
RFC4P35249 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.3■□□□□ 0.68
RFC4P35249 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
RFC4P35249 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
RFC4P35249 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RFC4P35249 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC19.29■□□□□ 0.68
RFC4P35249 CLUHP2-201ENST00000426660 1303 ntBASIC19.29■□□□□ 0.68
RFC4P35249 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RFC4P35249 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RFC4P35249 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
RFC4P35249 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 AC004899.1-201ENST00000424687 1714 ntBASIC19.29■□□□□ 0.68
RFC4P35249 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
RFC4P35249 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 NPPA-201ENST00000376476 728 ntTSL 3 BASIC19.29■□□□□ 0.68
RFC4P35249 TUBB8P8-201ENST00000458717 1058 ntBASIC19.29■□□□□ 0.68
RFC4P35249 SAMD11P1-201ENST00000571429 661 ntBASIC19.29■□□□□ 0.68
RFC4P35249 CENPX-208ENST00000584347 799 ntTSL 2 BASIC19.29■□□□□ 0.68
RFC4P35249 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
RFC4P35249 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
RFC4P35249 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
RFC4P35249 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms