Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 PIGL-212ENST00000581006 554 ntTSL 4 BASIC17.74■□□□□ 0.43
SMARCA1P28370 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 WASH3P-207ENST00000560956 1394 ntBASIC17.74■□□□□ 0.43
SMARCA1P28370 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.74■□□□□ 0.43
SMARCA1P28370 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC17.74■□□□□ 0.43
SMARCA1P28370 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SMARCA1P28370 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.73■□□□□ 0.43
SMARCA1P28370 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SMARCA1P28370 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.73■□□□□ 0.43
SMARCA1P28370 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SMARCA1P28370 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.73■□□□□ 0.43
SMARCA1P28370 KRT18P25-201ENST00000508931 1278 ntBASIC17.73■□□□□ 0.43
SMARCA1P28370 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.73■□□□□ 0.43
SMARCA1P28370 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC17.73■□□□□ 0.43
SMARCA1P28370 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC17.73■□□□□ 0.43
SMARCA1P28370 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SMARCA1P28370 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.73■□□□□ 0.43
SMARCA1P28370 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.73■□□□□ 0.43
SMARCA1P28370 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
SMARCA1P28370 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SMARCA1P28370 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 REXO1L4P-201ENST00000605109 1937 ntBASIC17.72■□□□□ 0.43
SMARCA1P28370 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SMARCA1P28370 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC17.72■□□□□ 0.43
SMARCA1P28370 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SMARCA1P28370 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 U91328.1-201ENST00000437528 223 ntBASIC17.72■□□□□ 0.43
SMARCA1P28370 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.72■□□□□ 0.43
SMARCA1P28370 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 AL109954.1-202ENST00000564051 2148 ntBASIC17.72■□□□□ 0.43
SMARCA1P28370 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC17.72■□□□□ 0.43
SMARCA1P28370 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.72■□□□□ 0.43
SMARCA1P28370 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
SMARCA1P28370 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SMARCA1P28370 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 AC023024.2-201ENST00000623561 1993 ntBASIC17.71■□□□□ 0.43
SMARCA1P28370 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC17.71■□□□□ 0.43
SMARCA1P28370 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC17.71■□□□□ 0.43
SMARCA1P28370 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SMARCA1P28370 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms