Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC124312.2-201ENST00000546615 427 ntTSL 3 BASIC14.29□□□□□ -0.12
MSX1P28360 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
MSX1P28360 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
MSX1P28360 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 AC132938.2-201ENST00000579188 680 ntBASIC14.29□□□□□ -0.12
MSX1P28360 AC015910.1-201ENST00000579400 975 ntBASIC14.29□□□□□ -0.12
MSX1P28360 CHCHD2P3-201ENST00000603038 451 ntBASIC14.29□□□□□ -0.12
MSX1P28360 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 AC004790.1-201ENST00000612686 536 ntBASIC14.29□□□□□ -0.12
MSX1P28360 AC007431.3-201ENST00000623221 587 ntBASIC14.29□□□□□ -0.12
MSX1P28360 AL591163.1-201ENST00000641757 987 ntBASIC14.29□□□□□ -0.12
MSX1P28360 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 SLC7A15P-201ENST00000424028 1363 ntBASIC14.29□□□□□ -0.12
MSX1P28360 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
MSX1P28360 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
MSX1P28360 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC14.29□□□□□ -0.12
MSX1P28360 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MSX1P28360 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MSX1P28360 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 TCAF2P1-201ENST00000291129 2421 ntBASIC14.28□□□□□ -0.12
MSX1P28360 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
MSX1P28360 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX1P28360 KRT18P64-201ENST00000434946 1219 ntBASIC14.28□□□□□ -0.12
MSX1P28360 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX1P28360 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX1P28360 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.28□□□□□ -0.12
MSX1P28360 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.28□□□□□ -0.12
MSX1P28360 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX1P28360 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX1P28360 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
MSX1P28360 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.28□□□□□ -0.12
MSX1P28360 MIR6805-201ENST00000615055 62 ntBASIC14.28□□□□□ -0.12
MSX1P28360 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX1P28360 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC14.28□□□□□ -0.12
MSX1P28360 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
MSX1P28360 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
MSX1P28360 CICP13-201ENST00000422015 2789 ntBASIC14.28□□□□□ -0.12
MSX1P28360 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
MSX1P28360 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
MSX1P28360 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.27□□□□□ -0.12
MSX1P28360 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
MSX1P28360 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
MSX1P28360 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.27□□□□□ -0.13
MSX1P28360 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC14.27□□□□□ -0.13
MSX1P28360 AC079776.1-201ENST00000401540 1152 ntBASIC14.27□□□□□ -0.13
MSX1P28360 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.27□□□□□ -0.13
MSX1P28360 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC14.27□□□□□ -0.13
MSX1P28360 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC14.27□□□□□ -0.13
MSX1P28360 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.27□□□□□ -0.13
MSX1P28360 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
MSX1P28360 SPDYE18-201ENST00000510091 1050 ntBASIC14.27□□□□□ -0.13
MSX1P28360 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms