Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.58■□□□□ 0.08
XRCC1P18887 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.58■□□□□ 0.08
XRCC1P18887 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
XRCC1P18887 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
XRCC1P18887 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
XRCC1P18887 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.58■□□□□ 0.08
XRCC1P18887 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.58■□□□□ 0.08
XRCC1P18887 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 BNIP3P1-202ENST00000550043 1585 ntBASIC15.58■□□□□ 0.08
XRCC1P18887 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
XRCC1P18887 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.57■□□□□ 0.08
XRCC1P18887 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 AC087481.3-201ENST00000602886 1894 ntBASIC15.57■□□□□ 0.08
XRCC1P18887 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 CALY-202ENST00000368555 783 ntTSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.57■□□□□ 0.08
XRCC1P18887 CRB3P1-201ENST00000449338 276 ntBASIC15.57■□□□□ 0.08
XRCC1P18887 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.57■□□□□ 0.08
XRCC1P18887 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
XRCC1P18887 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.57■□□□□ 0.08
XRCC1P18887 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.57■□□□□ 0.08
XRCC1P18887 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.57■□□□□ 0.08
XRCC1P18887 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.57■□□□□ 0.08
XRCC1P18887 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 AC004461.2-201ENST00000629517 803 ntBASIC15.57■□□□□ 0.08
XRCC1P18887 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.57■□□□□ 0.08
XRCC1P18887 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.57■□□□□ 0.08
XRCC1P18887 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.57■□□□□ 0.08
XRCC1P18887 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.57■□□□□ 0.08
XRCC1P18887 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.57■□□□□ 0.08
XRCC1P18887 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
XRCC1P18887 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
XRCC1P18887 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
XRCC1P18887 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.56■□□□□ 0.08
XRCC1P18887 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
XRCC1P18887 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
XRCC1P18887 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
XRCC1P18887 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.56■□□□□ 0.08
XRCC1P18887 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC15.56■□□□□ 0.08
XRCC1P18887 AC015922.1-201ENST00000421102 1152 ntBASIC15.56■□□□□ 0.08
XRCC1P18887 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC15.56■□□□□ 0.08
XRCC1P18887 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.56■□□□□ 0.08
XRCC1P18887 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
XRCC1P18887 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.56■□□□□ 0.08
XRCC1P18887 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.56■□□□□ 0.08
XRCC1P18887 AC025048.3-201ENST00000590609 569 ntBASIC15.56■□□□□ 0.08
XRCC1P18887 AC005702.4-201ENST00000618393 416 ntBASIC15.56■□□□□ 0.08
XRCC1P18887 AL109936.8-201ENST00000641772 604 ntBASIC15.56■□□□□ 0.08
XRCC1P18887 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms