Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
TNFP01375 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 AC099336.1-201ENST00000417053 1171 ntBASIC15.14■□□□□ 0.01
TNFP01375 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.14■□□□□ 0.01
TNFP01375 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.14■□□□□ 0.01
TNFP01375 FAM21FP-201ENST00000426241 1131 ntBASIC15.14■□□□□ 0.01
TNFP01375 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC15.14■□□□□ 0.01
TNFP01375 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.14■□□□□ 0.01
TNFP01375 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.14■□□□□ 0.01
TNFP01375 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 AC145423.3-201ENST00000615987 467 ntBASIC15.14■□□□□ 0.01
TNFP01375 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.13■□□□□ 0.01
TNFP01375 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.13■□□□□ 0.01
TNFP01375 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.13■□□□□ 0.01
TNFP01375 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC15.13■□□□□ 0.01
TNFP01375 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 AC025279.2-201ENST00000569730 653 ntBASIC15.13■□□□□ 0.01
TNFP01375 GNRHR2-203ENST00000581100 1187 ntBASIC15.13■□□□□ 0.01
TNFP01375 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 AL033527.4-201ENST00000641026 673 ntBASIC15.13■□□□□ 0.01
TNFP01375 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 PKD1P5-201ENST00000532415 10291 ntBASIC15.13■□□□□ 0.01
TNFP01375 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.13■□□□□ 0.01
TNFP01375 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
TNFP01375 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.13■□□□□ 0.01
TNFP01375 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
TNFP01375 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
TNFP01375 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.12■□□□□ 0.01
TNFP01375 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
TNFP01375 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms