Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
RNF40O75150 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RNF40O75150 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RNF40O75150 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RNF40O75150 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 UCKL1-AS1-201ENST00000623569 3602 ntBASIC16.91■□□□□ 0.3
RNF40O75150 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RNF40O75150 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
RNF40O75150 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF40O75150 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RNF40O75150 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.91■□□□□ 0.3
RNF40O75150 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 KRTAP4-4-201ENST00000390661 1081 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
RNF40O75150 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 PIN1P1-201ENST00000412108 996 ntBASIC16.91■□□□□ 0.3
RNF40O75150 TSSK5P-201ENST00000423978 907 ntBASIC16.91■□□□□ 0.3
RNF40O75150 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC16.91■□□□□ 0.3
RNF40O75150 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 MTND4LP12-201ENST00000448237 295 ntBASIC16.91■□□□□ 0.3
RNF40O75150 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 KRT18P34-201ENST00000488218 1270 ntBASIC16.91■□□□□ 0.3
RNF40O75150 COQ9-214ENST00000567933 882 ntTSL 3 BASIC16.91■□□□□ 0.3
RNF40O75150 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RNF40O75150 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF40O75150 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF40O75150 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.91■□□□□ 0.3
RNF40O75150 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RNF40O75150 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.91■□□□□ 0.3
RNF40O75150 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.91■□□□□ 0.3
RNF40O75150 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 AC022144.1-201ENST00000602255 1580 ntBASIC16.9■□□□□ 0.3
RNF40O75150 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.9■□□□□ 0.3
RNF40O75150 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.9■□□□□ 0.3
RNF40O75150 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.9■□□□□ 0.3
RNF40O75150 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.9■□□□□ 0.3
RNF40O75150 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.9■□□□□ 0.3
RNF40O75150 AC007967.4-201ENST00000614700 386 ntBASIC16.9■□□□□ 0.3
RNF40O75150 AL138828.2-201ENST00000615812 383 ntBASIC16.9■□□□□ 0.3
RNF40O75150 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 AL358472.5-202ENST00000641448 1267 ntBASIC16.9■□□□□ 0.3
RNF40O75150 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
RNF40O75150 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 AC005912.2-201ENST00000619492 2400 ntBASIC16.9■□□□□ 0.3
RNF40O75150 AC087481.3-201ENST00000602886 1894 ntBASIC16.9■□□□□ 0.3
RNF40O75150 AC232323.1-201ENST00000540724 2099 ntBASIC16.9■□□□□ 0.3
RNF40O75150 REXO1L5P-201ENST00000622260 2098 ntBASIC16.9■□□□□ 0.3
RNF40O75150 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.9■□□□□ 0.3
RNF40O75150 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
RNF40O75150 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms