Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.6■□□□□ 0.09
SHOX2O60902 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 AC068587.6-202ENST00000641839 5619 ntBASIC15.6■□□□□ 0.09
SHOX2O60902 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SHOX2O60902 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SHOX2O60902 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SHOX2O60902 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.59■□□□□ 0.09
SHOX2O60902 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
SHOX2O60902 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SHOX2O60902 POM121L3P-201ENST00000419331 1163 ntBASIC15.59■□□□□ 0.09
SHOX2O60902 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.59■□□□□ 0.09
SHOX2O60902 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.59■□□□□ 0.09
SHOX2O60902 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC15.59■□□□□ 0.09
SHOX2O60902 PKD1P5-201ENST00000532415 10291 ntBASIC15.59■□□□□ 0.09
SHOX2O60902 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.59■□□□□ 0.09
SHOX2O60902 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.59■□□□□ 0.09
SHOX2O60902 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC15.59■□□□□ 0.09
SHOX2O60902 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SHOX2O60902 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
SHOX2O60902 AL139385.1-201ENST00000611744 3272 ntBASIC15.58■□□□□ 0.09
SHOX2O60902 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.09
SHOX2O60902 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SHOX2O60902 AC084364.1-201ENST00000551967 1556 ntBASIC15.58■□□□□ 0.09
SHOX2O60902 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.58■□□□□ 0.09
SHOX2O60902 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC15.58■□□□□ 0.09
SHOX2O60902 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
SHOX2O60902 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.58■□□□□ 0.09
SHOX2O60902 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.58■□□□□ 0.08
SHOX2O60902 QPRT-203ENST00000562473 579 ntTSL 3 BASIC15.58■□□□□ 0.08
SHOX2O60902 AC139887.3-201ENST00000568585 713 ntBASIC15.58■□□□□ 0.08
SHOX2O60902 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 AP001269.4-201ENST00000609611 512 ntBASIC15.58■□□□□ 0.08
SHOX2O60902 NPAP1P7-201ENST00000613027 823 ntBASIC15.58■□□□□ 0.08
SHOX2O60902 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC15.58■□□□□ 0.08
SHOX2O60902 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC15.58■□□□□ 0.08
SHOX2O60902 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
SHOX2O60902 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 KRT8P22-201ENST00000562317 1415 ntBASIC15.58■□□□□ 0.08
SHOX2O60902 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.58■□□□□ 0.08
SHOX2O60902 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 218.1 ms