Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AL805961.2-201ENST00000642139 4817 ntBASIC12.62□□□□□ -0.39
HMGB3O15347 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 FN1-212ENST00000446046 7952 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 IKZF1-203ENST00000346667 5376 ntTSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 GRK6P1-201ENST00000400595 1711 ntBASIC12.62□□□□□ -0.39
HMGB3O15347 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 YLPM1-207ENST00000552421 4899 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
HMGB3O15347 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 XIRP1-201ENST00000340369 6460 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
HMGB3O15347 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.62□□□□□ -0.39
HMGB3O15347 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
HMGB3O15347 HDLBP-214ENST00000427183 6238 ntTSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 VWA8-203ENST00000379310 7147 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 POM121L3P-201ENST00000419331 1163 ntBASIC12.61□□□□□ -0.39
HMGB3O15347 TSSC2-201ENST00000450217 709 ntBASIC12.61□□□□□ -0.39
HMGB3O15347 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC12.61□□□□□ -0.39
HMGB3O15347 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC12.61□□□□□ -0.39
HMGB3O15347 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC12.61□□□□□ -0.39
HMGB3O15347 AP002414.4-201ENST00000589764 1148 ntBASIC12.61□□□□□ -0.39
HMGB3O15347 AP001269.4-201ENST00000609611 512 ntBASIC12.61□□□□□ -0.39
HMGB3O15347 BSG-214ENST00000614867 960 ntTSL 3 BASIC12.61□□□□□ -0.39
HMGB3O15347 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 CAD-201ENST00000264705 7265 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 CICP14-201ENST00000629111 2732 ntBASIC12.61□□□□□ -0.39
HMGB3O15347 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC12.61□□□□□ -0.39
HMGB3O15347 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC12.61□□□□□ -0.39
HMGB3O15347 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 AP005117.1-201ENST00000584346 1413 ntBASIC12.61□□□□□ -0.39
HMGB3O15347 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HMGB3O15347 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC12.61□□□□□ -0.39
HMGB3O15347 NMNAT2-201ENST00000287713 5663 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 AJ011931.1-201ENST00000618749 2492 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC12.6□□□□□ -0.39
HMGB3O15347 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HMGB3O15347 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 DRAXINP1-201ENST00000437611 948 ntBASIC12.6□□□□□ -0.39
HMGB3O15347 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC12.6□□□□□ -0.39
HMGB3O15347 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC12.6□□□□□ -0.39
HMGB3O15347 BET1L-206ENST00000486280 665 ntTSL 3 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.6 ms