Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AL589739.1-201ENST00000607720 493 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 MIR6069-201ENST00000620069 79 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 CETN4P-206ENST00000642099 2168 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AGAP7P-201ENST00000582299 2062 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 AGAP14-201ENST00000624701 2060 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
HIF3AQ9Y2N7 GRAMD4P3-201ENST00000621665 1669 ntBASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AC069262.1-201ENST00000539058 672 ntBASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AC092865.5-201ENST00000545435 363 ntBASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 Z97205.2-201ENST00000564697 1639 ntBASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AC099063.4-201ENST00000641099 1602 ntBASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.1□□□□□ -0.15
HIF3AQ9Y2N7 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AC074338.1-201ENST00000416825 156 ntBASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.09□□□□□ -0.15
HIF3AQ9Y2N7 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms