Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 ALG3P1-201ENST00000508806 1114 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
SCN11AQ9UI33 AC244452.3-201ENST00000636814 210 ntBASIC19.55■□□□□ 0.72
SCN11AQ9UI33 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AL137783.1-201ENST00000623494 1896 ntBASIC19.54■□□□□ 0.72
SCN11AQ9UI33 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AL360270.3-201ENST00000609118 1348 ntBASIC19.54■□□□□ 0.72
SCN11AQ9UI33 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AC012508.2-201ENST00000567613 1472 ntBASIC19.54■□□□□ 0.72
SCN11AQ9UI33 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 OARD1-204ENST00000464633 717 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AC026434.2-201ENST00000506094 1078 ntBASIC19.54■□□□□ 0.72
SCN11AQ9UI33 PARP8-218ENST00000513738 596 ntTSL 4 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 FGFR3P5-201ENST00000564496 886 ntBASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 CDK7-214ENST00000626796 358 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC19.54■□□□□ 0.72
SCN11AQ9UI33 AC003102.2-201ENST00000589195 1469 ntBASIC19.53■□□□□ 0.72
SCN11AQ9UI33 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 AC009779.1-201ENST00000551138 283 ntBASIC19.53■□□□□ 0.72
SCN11AQ9UI33 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 SYT17-208ENST00000568433 812 ntTSL 3 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC19.53■□□□□ 0.72
SCN11AQ9UI33 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 AC245884.6-201ENST00000515672 1067 ntBASIC19.52■□□□□ 0.72
SCN11AQ9UI33 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 RN7SL774P-201ENST00000577467 290 ntBASIC19.52■□□□□ 0.72
SCN11AQ9UI33 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 AC016629.1-201ENST00000596579 586 ntBASIC19.52■□□□□ 0.72
SCN11AQ9UI33 AL136301.1-201ENST00000615830 422 ntBASIC19.52■□□□□ 0.72
SCN11AQ9UI33 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
SCN11AQ9UI33 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SCN11AQ9UI33 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms