Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 FTLP10-202ENST00000505798 471 ntBASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 AL353726.2-201ENST00000623259 884 ntBASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 AC127383.1-201ENST00000444697 1800 ntBASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 AC112504.1-201ENST00000623415 1841 ntBASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC87Q9NVE4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 PCDHA14-201ENST00000506751 2298 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AL136309.1-201ENST00000403917 691 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AL008707.1-201ENST00000422498 534 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AC022217.1-201ENST00000521069 738 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 FGFR3P5-201ENST00000564496 886 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AC004466.1-201ENST00000599515 1080 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AC138466.3-201ENST00000619983 221 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AC022748.3-201ENST00000621828 275 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 NKILA-202ENST00000614771 2598 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AC092978.1-202ENST00000637590 1327 ntBASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC87Q9NVE4 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 AC055811.4-201ENST00000624039 1754 ntBASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC87Q9NVE4 Z97180.1-201ENST00000445173 988 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 75 ms