Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 AL033527.5-201ENST00000641382 801 ntBASIC18.32■□□□□ 0.52
RNF41Q9H4P4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF41Q9H4P4 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 RN7SL752P-201ENST00000463779 287 ntBASIC18.31■□□□□ 0.52
RNF41Q9H4P4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 KRT8P22-201ENST00000562317 1415 ntBASIC18.31■□□□□ 0.52
RNF41Q9H4P4 CU639417.3-201ENST00000624240 1404 ntBASIC18.31■□□□□ 0.52
RNF41Q9H4P4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF41Q9H4P4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 GRAP-202ENST00000395635 834 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 AC005225.4-201ENST00000557330 545 ntBASIC18.3■□□□□ 0.52
RNF41Q9H4P4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.3■□□□□ 0.52
RNF41Q9H4P4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 AL138799.1-201ENST00000448213 1675 ntBASIC18.29■□□□□ 0.52
RNF41Q9H4P4 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RNF41Q9H4P4 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms