Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 OR8S1-201ENST00000310194 1080 ntBASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 CFL1-212ENST00000531413 636 ntTSL 3 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CHMP4AQ9BY43 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 AC134312.5-201ENST00000568031 1313 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 AC092127.1-201ENST00000567093 3455 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 U91328.1-201ENST00000437528 223 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 USP32P1-208ENST00000506594 1164 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 KRT17P8-201ENST00000540749 863 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 RAB43P1-201ENST00000561790 589 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 AC020658.6-201ENST00000623564 1870 ntBASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
CHMP4AQ9BY43 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 AP001582.1-201ENST00000525856 295 ntBASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 SAMD11P1-201ENST00000571429 661 ntBASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 RPSAP52-203ENST00000622976 1023 ntBASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
CHMP4AQ9BY43 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.77■□□□□ 0.76
CHMP4AQ9BY43 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms