Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 MIR1247-201ENST00000408206 136 ntBASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 AC036164.1-201ENST00000570544 333 ntBASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
NKX2-3Q8TAU0 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 AC138035.3-201ENST00000622706 2791 ntBASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 AL162726.2-201ENST00000438986 1017 ntBASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 AC026410.3-201ENST00000514280 936 ntBASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 AC243960.2-201ENST00000600996 747 ntBASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 AC106872.11-201ENST00000605838 421 ntBASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
NKX2-3Q8TAU0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 DERL2-202ENST00000570848 657 ntTSL 5 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 AC107373.2-201ENST00000607735 490 ntBASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 AC087481.3-201ENST00000602886 1894 ntBASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
NKX2-3Q8TAU0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms