Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CCDC58Q4VC31 AL390755.1-201ENST00000623716 2027 ntBASIC14.03□□□□□ -0.16
CCDC58Q4VC31 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 ST20-AS1-201ENST00000560255 4223 ntBASIC14.03□□□□□ -0.16
CCDC58Q4VC31 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 RGS12-202ENST00000338806 3010 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 CRYGEP-201ENST00000412192 528 ntBASIC14.03□□□□□ -0.16
CCDC58Q4VC31 IGLL3P-201ENST00000412472 434 ntBASIC14.03□□□□□ -0.16
CCDC58Q4VC31 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 NMU-203ENST00000507338 658 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 IFNL4P1-201ENST00000607083 540 ntBASIC14.03□□□□□ -0.16
CCDC58Q4VC31 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 REXO1L1P-202ENST00000608646 1974 ntBASIC14.03□□□□□ -0.16
CCDC58Q4VC31 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
CCDC58Q4VC31 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
CCDC58Q4VC31 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 AC004987.2-201ENST00000395959 1148 ntBASIC14.02□□□□□ -0.17
CCDC58Q4VC31 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CCDC58Q4VC31 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms