Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.57□□□□□ -0.24
UBA52P62987 MIR648-201ENST00000385046 94 ntBASIC13.57□□□□□ -0.24
UBA52P62987 MIR943-201ENST00000401286 94 ntBASIC13.57□□□□□ -0.24
UBA52P62987 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 KLF2P3-201ENST00000451977 1087 ntBASIC13.57□□□□□ -0.24
UBA52P62987 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.57□□□□□ -0.24
UBA52P62987 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 AC243562.1-201ENST00000560672 389 ntBASIC13.57□□□□□ -0.24
UBA52P62987 NAA60-208ENST00000570819 833 ntTSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 MIR4515-201ENST00000584082 81 ntBASIC13.57□□□□□ -0.24
UBA52P62987 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 AL161645.1-201ENST00000622716 1255 ntBASIC13.57□□□□□ -0.24
UBA52P62987 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.57□□□□□ -0.24
UBA52P62987 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
UBA52P62987 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
UBA52P62987 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
UBA52P62987 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
UBA52P62987 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.57□□□□□ -0.24
UBA52P62987 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC13.56□□□□□ -0.24
UBA52P62987 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.56□□□□□ -0.24
UBA52P62987 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.56□□□□□ -0.24
UBA52P62987 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.56□□□□□ -0.24
UBA52P62987 VMA21-202ENST00000370361 693 ntTSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 AC107890.1-201ENST00000422478 521 ntBASIC13.56□□□□□ -0.24
UBA52P62987 FAM58DP-201ENST00000428076 619 ntBASIC13.56□□□□□ -0.24
UBA52P62987 RBPMS2P1-201ENST00000437762 623 ntBASIC13.56□□□□□ -0.24
UBA52P62987 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC13.56□□□□□ -0.24
UBA52P62987 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC13.56□□□□□ -0.24
UBA52P62987 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 AC125807.1-201ENST00000483097 614 ntBASIC13.56□□□□□ -0.24
UBA52P62987 TERF1P3-201ENST00000505638 1227 ntBASIC13.56□□□□□ -0.24
UBA52P62987 IGHV3-62-201ENST00000520057 340 ntBASIC13.56□□□□□ -0.24
UBA52P62987 DUX4L17-201ENST00000557360 1267 ntBASIC13.56□□□□□ -0.24
UBA52P62987 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.56□□□□□ -0.24
UBA52P62987 CD7-202ENST00000578509 925 ntTSL 3 BASIC13.56□□□□□ -0.24
UBA52P62987 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC13.56□□□□□ -0.24
UBA52P62987 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 AF228730.6-201ENST00000641497 218 ntBASIC13.56□□□□□ -0.24
UBA52P62987 AC084121.3-201ENST00000641716 218 ntBASIC13.56□□□□□ -0.24
UBA52P62987 AC105233.6-201ENST00000642093 218 ntBASIC13.56□□□□□ -0.24
UBA52P62987 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.56□□□□□ -0.24
UBA52P62987 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 REXO1L8P-201ENST00000604378 1897 ntBASIC13.56□□□□□ -0.24
UBA52P62987 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 AL021920.2-201ENST00000624828 1351 ntBASIC13.56□□□□□ -0.24
UBA52P62987 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.56□□□□□ -0.24
UBA52P62987 AL671710.1-201ENST00000610245 2349 ntBASIC13.56□□□□□ -0.24
UBA52P62987 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
UBA52P62987 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC13.56□□□□□ -0.24
UBA52P62987 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC13.55□□□□□ -0.24
UBA52P62987 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC13.55□□□□□ -0.24
UBA52P62987 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
UBA52P62987 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
UBA52P62987 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms