Protein–RNA interactions for Protein: P62068

USP46, Ubiquitin carboxyl-terminal hydrolase 46, humanhuman

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP46P62068 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.41■□□□□ 0.22
USP46P62068 ARSEP1-201ENST00000420443 635 ntBASIC16.41■□□□□ 0.22
USP46P62068 AC112492.5-201ENST00000421897 457 ntBASIC16.41■□□□□ 0.22
USP46P62068 AC134915.1-201ENST00000426461 574 ntBASIC16.41■□□□□ 0.22
USP46P62068 AC007389.4-201ENST00000454674 793 ntBASIC16.41■□□□□ 0.22
USP46P62068 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.41■□□□□ 0.22
USP46P62068 CU634019.7-201ENST00000624153 1185 ntBASIC16.41■□□□□ 0.22
USP46P62068 FP236241.2-201ENST00000624906 1185 ntBASIC16.41■□□□□ 0.22
USP46P62068 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 KRT8P22-201ENST00000562317 1415 ntBASIC16.41■□□□□ 0.22
USP46P62068 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
USP46P62068 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.41■□□□□ 0.22
USP46P62068 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
USP46P62068 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.41■□□□□ 0.22
USP46P62068 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
USP46P62068 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
USP46P62068 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.41■□□□□ 0.22
USP46P62068 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
USP46P62068 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
USP46P62068 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 NFIC-211ENST00000641145 8399 ntBASIC16.4■□□□□ 0.22
USP46P62068 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 PRAL-201ENST00000624952 3286 ntBASIC16.4■□□□□ 0.22
USP46P62068 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.4■□□□□ 0.22
USP46P62068 AL133267.1-201ENST00000398220 340 ntBASIC16.4■□□□□ 0.22
USP46P62068 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC16.4■□□□□ 0.22
USP46P62068 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC16.4■□□□□ 0.22
USP46P62068 AC244107.1-201ENST00000442033 332 ntBASIC16.4■□□□□ 0.22
USP46P62068 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
USP46P62068 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.4■□□□□ 0.22
USP46P62068 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.4■□□□□ 0.22
USP46P62068 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.4■□□□□ 0.22
USP46P62068 AC120045.2-201ENST00000567334 178 ntBASIC16.4■□□□□ 0.22
USP46P62068 AC015910.1-201ENST00000579400 975 ntBASIC16.4■□□□□ 0.22
USP46P62068 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.4■□□□□ 0.22
USP46P62068 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 AL162274.1-201ENST00000617191 1098 ntBASIC16.4■□□□□ 0.22
USP46P62068 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.4■□□□□ 0.22
USP46P62068 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
USP46P62068 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
USP46P62068 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
USP46P62068 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
USP46P62068 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
USP46P62068 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.39■□□□□ 0.21
USP46P62068 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
USP46P62068 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC16.39■□□□□ 0.21
USP46P62068 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.39■□□□□ 0.21
USP46P62068 KRT17P8-201ENST00000540749 863 ntBASIC16.39■□□□□ 0.21
USP46P62068 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC16.39■□□□□ 0.21
USP46P62068 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
USP46P62068 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.39■□□□□ 0.21
USP46P62068 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.39■□□□□ 0.21
USP46P62068 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms