Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 PPT1-215ENST00000641471 2368 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 RERE-202ENST00000377464 6733 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
CKS1BP61024 IER3-202ENST00000376377 1350 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC11.05□□□□□ -0.64
CKS1BP61024 CPT1B-202ENST00000360719 2319 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC11.05□□□□□ -0.64
CKS1BP61024 PCED1CP-201ENST00000419887 785 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
CKS1BP61024 KRT16P4-201ENST00000453883 522 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC11.05□□□□□ -0.64
CKS1BP61024 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC11.05□□□□□ -0.64
CKS1BP61024 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC11.05□□□□□ -0.64
CKS1BP61024 AC087388.1-201ENST00000571370 1112 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 AP005117.1-201ENST00000584346 1413 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 PI4KAP1-204ENST00000612579 1703 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 AC020765.3-201ENST00000613051 740 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 CCNC-219ENST00000627680 896 ntTSL 5 BASIC11.05□□□□□ -0.64
CKS1BP61024 AF228730.7-201ENST00000641842 219 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 AC073957.3-201ENST00000609998 6758 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
CKS1BP61024 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 MBLAC2-202ENST00000514906 1936 ntBASIC11.05□□□□□ -0.64
CKS1BP61024 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC11.05□□□□□ -0.64
CKS1BP61024 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
CKS1BP61024 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC11.05□□□□□ -0.64
CKS1BP61024 SPTSSB-201ENST00000359175 3103 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CKS1BP61024 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 REXO1L8P-201ENST00000604378 1897 ntBASIC11.04□□□□□ -0.64
CKS1BP61024 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC11.04□□□□□ -0.64
CKS1BP61024 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
CKS1BP61024 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC11.04□□□□□ -0.64
CKS1BP61024 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 TNN-202ENST00000621086 4234 ntTSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC11.04□□□□□ -0.64
CKS1BP61024 PAQR3-209ENST00000512733 9811 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC11.04□□□□□ -0.64
CKS1BP61024 MED16-201ENST00000269814 1199 ntTSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC11.04□□□□□ -0.64
CKS1BP61024 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 FAM86EP-206ENST00000510506 987 ntBASIC11.04□□□□□ -0.64
CKS1BP61024 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 AC064862.7-201ENST00000604520 867 ntBASIC11.04□□□□□ -0.64
CKS1BP61024 AL139424.1-201ENST00000607572 797 ntBASIC11.04□□□□□ -0.64
CKS1BP61024 AC116407.4-201ENST00000623319 1061 ntBASIC11.04□□□□□ -0.64
CKS1BP61024 AL139288.1-201ENST00000623748 933 ntBASIC11.04□□□□□ -0.64
CKS1BP61024 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 HNRNPH1-202ENST00000356731 3667 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
CKS1BP61024 TRHDE-AS1-201ENST00000426250 3684 ntTSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 RSBN1L-201ENST00000334955 6422 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC11.04□□□□□ -0.64
CKS1BP61024 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
CKS1BP61024 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 ADAM12-202ENST00000368679 7938 ntAPPRIS P4 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
CKS1BP61024 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms