Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.11■□□□□ 0.01
FOXA1P55317 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
FOXA1P55317 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 AC005912.2-201ENST00000619492 2400 ntBASIC15.1■□□□□ 0.01
FOXA1P55317 AC139749.1-202ENST00000617529 3139 ntBASIC15.1■□□□□ 0.01
FOXA1P55317 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
FOXA1P55317 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.1■□□□□ 0.01
FOXA1P55317 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.1■□□□□ 0.01
FOXA1P55317 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.1■□□□□ 0.01
FOXA1P55317 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.1■□□□□ 0.01
FOXA1P55317 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.1■□□□□ 0.01
FOXA1P55317 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.1■□□□□ 0.01
FOXA1P55317 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
FOXA1P55317 AC004835.2-201ENST00000603762 682 ntBASIC15.1■□□□□ 0.01
FOXA1P55317 MIR6080-201ENST00000617359 66 ntBASIC15.1■□□□□ 0.01
FOXA1P55317 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
FOXA1P55317 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
FOXA1P55317 AL035456.1-201ENST00000456064 1369 ntBASIC15.1■□□□□ 0.01
FOXA1P55317 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
FOXA1P55317 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
FOXA1P55317 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 REXO1L2P-201ENST00000425429 2069 ntBASIC15.09■□□□□ 0.01
FOXA1P55317 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
FOXA1P55317 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA1P55317 RPL30-202ENST00000396070 440 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 RPSAP43-201ENST00000402237 625 ntBASIC15.09■□□□□ 0.01
FOXA1P55317 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 AC023141.5-201ENST00000458585 616 ntBASIC15.09■□□□□ 0.01
FOXA1P55317 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA1P55317 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA1P55317 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC15.09■□□□□ 0.01
FOXA1P55317 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA1P55317 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.09■□□□□ 0.01
FOXA1P55317 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
FOXA1P55317 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.09■□□□□ 0.01
FOXA1P55317 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
FOXA1P55317 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.09■□□□□ 0.01
FOXA1P55317 WASH3P-207ENST00000560956 1394 ntBASIC15.09■□□□□ 0.01
FOXA1P55317 FO538757.1-201ENST00000623083 1397 ntBASIC15.09■□□□□ 0.01
FOXA1P55317 AL359258.3-201ENST00000622910 2331 ntBASIC15.09■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms