Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.82■□□□□ 0.44
HMGCS2P54868 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
HMGCS2P54868 AC112504.1-201ENST00000623415 1841 ntBASIC17.82■□□□□ 0.44
HMGCS2P54868 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 LINC02199-201ENST00000506655 2702 ntBASIC17.81■□□□□ 0.44
HMGCS2P54868 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 AC026471.1-201ENST00000564629 3026 ntBASIC17.81■□□□□ 0.44
HMGCS2P54868 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 CSH2-201ENST00000336844 1173 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 CSH2-202ENST00000345366 598 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.81■□□□□ 0.44
HMGCS2P54868 AC079178.1-201ENST00000420915 656 ntBASIC17.81■□□□□ 0.44
HMGCS2P54868 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 PPY2P-201ENST00000582808 702 ntBASIC17.81■□□□□ 0.44
HMGCS2P54868 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 NKG7-204ENST00000595217 816 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 AC106872.11-201ENST00000605838 421 ntBASIC17.81■□□□□ 0.44
HMGCS2P54868 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
HMGCS2P54868 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.81■□□□□ 0.44
HMGCS2P54868 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
HMGCS2P54868 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.8■□□□□ 0.44
HMGCS2P54868 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
HMGCS2P54868 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
HMGCS2P54868 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGCS2P54868 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
HMGCS2P54868 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 AC092506.1-202ENST00000401022 528 ntBASIC17.8■□□□□ 0.44
HMGCS2P54868 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
HMGCS2P54868 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGCS2P54868 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.8■□□□□ 0.44
HMGCS2P54868 AC126915.1-201ENST00000522847 1038 ntBASIC17.8■□□□□ 0.44
HMGCS2P54868 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC17.8■□□□□ 0.44
HMGCS2P54868 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGCS2P54868 OR10B1P-201ENST00000601666 907 ntBASIC17.8■□□□□ 0.44
HMGCS2P54868 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
HMGCS2P54868 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.8■□□□□ 0.44
HMGCS2P54868 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
HMGCS2P54868 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
HMGCS2P54868 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
HMGCS2P54868 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.8■□□□□ 0.44
HMGCS2P54868 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 AC127383.1-201ENST00000444697 1800 ntBASIC17.79■□□□□ 0.44
HMGCS2P54868 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
HMGCS2P54868 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGCS2P54868 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGCS2P54868 LSM5-207ENST00000410044 687 ntTSL 3 BASIC17.79■□□□□ 0.44
HMGCS2P54868 POM121L8P-201ENST00000417732 1281 ntBASIC17.79■□□□□ 0.44
HMGCS2P54868 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGCS2P54868 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 HNRNPA1P63-201ENST00000427917 963 ntBASIC17.79■□□□□ 0.44
HMGCS2P54868 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 POM121L9P-203ENST00000441984 1285 ntBASIC17.79■□□□□ 0.44
HMGCS2P54868 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGCS2P54868 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGCS2P54868 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
HMGCS2P54868 AC073413.1-201ENST00000603927 732 ntBASIC17.79■□□□□ 0.44
HMGCS2P54868 AC244157.2-201ENST00000616239 1006 ntBASIC17.79■□□□□ 0.44
HMGCS2P54868 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
HMGCS2P54868 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.79■□□□□ 0.44
HMGCS2P54868 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
HMGCS2P54868 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC17.79■□□□□ 0.44
HMGCS2P54868 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
HMGCS2P54868 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.78■□□□□ 0.44
HMGCS2P54868 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
HMGCS2P54868 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
HMGCS2P54868 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms