Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 AL035456.1-201ENST00000456064 1369 ntBASIC13.76□□□□□ -0.21
CX3CR1P49238 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 NME4-207ENST00000450036 985 ntTSL 3 BASIC13.76□□□□□ -0.21
CX3CR1P49238 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.76□□□□□ -0.21
CX3CR1P49238 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 AC092865.5-201ENST00000545435 363 ntBASIC13.76□□□□□ -0.21
CX3CR1P49238 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC13.76□□□□□ -0.21
CX3CR1P49238 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.76□□□□□ -0.21
CX3CR1P49238 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CX3CR1P49238 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC13.76□□□□□ -0.21
CX3CR1P49238 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 KLK8-202ENST00000320838 456 ntTSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
CX3CR1P49238 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 FO393414.2-201ENST00000405153 598 ntBASIC13.75□□□□□ -0.21
CX3CR1P49238 SPDYE17-201ENST00000412399 783 ntBASIC13.75□□□□□ -0.21
CX3CR1P49238 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC13.75□□□□□ -0.21
CX3CR1P49238 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC13.75□□□□□ -0.21
CX3CR1P49238 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC13.75□□□□□ -0.21
CX3CR1P49238 MIR4453-201ENST00000584019 89 ntBASIC13.75□□□□□ -0.21
CX3CR1P49238 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.75□□□□□ -0.21
CX3CR1P49238 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 AL133215.2-201ENST00000609242 977 ntBASIC13.75□□□□□ -0.21
CX3CR1P49238 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 CELP-203ENST00000624767 2414 ntTSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.75□□□□□ -0.21
CX3CR1P49238 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
CX3CR1P49238 GRN-214ENST00000589265 1632 ntTSL 5 BASIC13.75□□□□□ -0.21
CX3CR1P49238 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.75□□□□□ -0.21
CX3CR1P49238 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms