Protein–RNA interactions for Protein: P46736

BRCC3, Lys-63-specific deubiquitinase BRCC36, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCC3P46736 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCC3P46736 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 AC092658.1-201ENST00000505836 891 ntBASIC16.5■□□□□ 0.23
BRCC3P46736 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCC3P46736 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCC3P46736 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 AL583810.1-201ENST00000553344 1045 ntBASIC16.5■□□□□ 0.23
BRCC3P46736 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCC3P46736 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC16.5■□□□□ 0.23
BRCC3P46736 AC025279.2-201ENST00000569730 653 ntBASIC16.5■□□□□ 0.23
BRCC3P46736 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BRCC3P46736 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.5■□□□□ 0.23
BRCC3P46736 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.5■□□□□ 0.23
BRCC3P46736 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.5■□□□□ 0.23
BRCC3P46736 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BRCC3P46736 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BRCC3P46736 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BRCC3P46736 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BRCC3P46736 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.5■□□□□ 0.23
BRCC3P46736 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 C2orf27AP3-201ENST00000434123 579 ntBASIC16.49■□□□□ 0.23
BRCC3P46736 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 FO681548.1-201ENST00000455617 1132 ntBASIC16.49■□□□□ 0.23
BRCC3P46736 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.49■□□□□ 0.23
BRCC3P46736 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.49■□□□□ 0.23
BRCC3P46736 KRT18P25-201ENST00000508931 1278 ntBASIC16.49■□□□□ 0.23
BRCC3P46736 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.49■□□□□ 0.23
BRCC3P46736 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.49■□□□□ 0.23
BRCC3P46736 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 AL354718.3-201ENST00000616414 581 ntBASIC16.49■□□□□ 0.23
BRCC3P46736 CR382287.1-201ENST00000623954 586 ntBASIC16.49■□□□□ 0.23
BRCC3P46736 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
BRCC3P46736 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.49■□□□□ 0.23
BRCC3P46736 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BRCC3P46736 AC092850.2-201ENST00000623821 2697 ntBASIC16.48■□□□□ 0.23
BRCC3P46736 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BRCC3P46736 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.48■□□□□ 0.23
BRCC3P46736 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 KLF2P2-201ENST00000416807 1039 ntBASIC16.48■□□□□ 0.23
BRCC3P46736 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.48■□□□□ 0.23
BRCC3P46736 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
BRCC3P46736 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.48■□□□□ 0.23
BRCC3P46736 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.48■□□□□ 0.23
BRCC3P46736 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.48■□□□□ 0.23
BRCC3P46736 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
BRCC3P46736 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 AC148477.4-201ENST00000613430 1793 ntBASIC16.48■□□□□ 0.23
BRCC3P46736 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
BRCC3P46736 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
BRCC3P46736 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms