Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.74□□□□□ -0.05
SOX3P41225 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 AP001282.1-201ENST00000531301 1499 ntBASIC14.74□□□□□ -0.05
SOX3P41225 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
SOX3P41225 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 KRT8P37-201ENST00000451609 1420 ntBASIC14.74□□□□□ -0.05
SOX3P41225 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.74□□□□□ -0.05
SOX3P41225 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.73□□□□□ -0.05
SOX3P41225 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.73□□□□□ -0.05
SOX3P41225 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.73□□□□□ -0.05
SOX3P41225 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC14.73□□□□□ -0.05
SOX3P41225 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC14.73□□□□□ -0.05
SOX3P41225 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 MIR648-201ENST00000385046 94 ntBASIC14.73□□□□□ -0.05
SOX3P41225 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 FO393414.2-201ENST00000405153 598 ntBASIC14.73□□□□□ -0.05
SOX3P41225 HIST3H2BA-201ENST00000436555 524 ntBASIC14.73□□□□□ -0.05
SOX3P41225 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.73□□□□□ -0.05
SOX3P41225 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.73□□□□□ -0.05
SOX3P41225 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.73□□□□□ -0.05
SOX3P41225 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.73□□□□□ -0.05
SOX3P41225 AL109936.8-201ENST00000641772 604 ntBASIC14.73□□□□□ -0.05
SOX3P41225 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SOX3P41225 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
SOX3P41225 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
SOX3P41225 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.73□□□□□ -0.05
SOX3P41225 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SOX3P41225 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.73□□□□□ -0.05
SOX3P41225 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 AL109954.1-202ENST00000564051 2148 ntBASIC14.72□□□□□ -0.05
SOX3P41225 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.72□□□□□ -0.05
SOX3P41225 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 AC106881.1-201ENST00000605849 3329 ntBASIC14.72□□□□□ -0.05
SOX3P41225 BTBD7P1-201ENST00000447253 1453 ntBASIC14.72□□□□□ -0.05
SOX3P41225 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.72□□□□□ -0.05
SOX3P41225 AC126755.1-201ENST00000525846 6405 ntBASIC14.72□□□□□ -0.05
SOX3P41225 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SOX3P41225 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SOX3P41225 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 AL035633.1-201ENST00000406139 838 ntBASIC14.72□□□□□ -0.05
SOX3P41225 AZGP1P1-201ENST00000411909 902 ntBASIC14.72□□□□□ -0.05
SOX3P41225 GOLGA6L11P-201ENST00000417252 1298 ntBASIC14.72□□□□□ -0.05
SOX3P41225 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 EEF1DP4-201ENST00000446006 880 ntBASIC14.72□□□□□ -0.05
SOX3P41225 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.72□□□□□ -0.05
SOX3P41225 SDHAP3-202ENST00000515467 728 ntBASIC14.72□□□□□ -0.05
SOX3P41225 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.72□□□□□ -0.05
SOX3P41225 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.72□□□□□ -0.05
SOX3P41225 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SOX3P41225 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms