Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC17.46■□□□□ 0.39
CIITAP33076 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC17.46■□□□□ 0.39
CIITAP33076 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CIITAP33076 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CIITAP33076 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.46■□□□□ 0.39
CIITAP33076 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
CIITAP33076 AL645937.2-201ENST00000396808 931 ntBASIC17.46■□□□□ 0.39
CIITAP33076 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.46■□□□□ 0.39
CIITAP33076 TMEM14DP-201ENST00000422205 345 ntBASIC17.46■□□□□ 0.39
CIITAP33076 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 U91328.1-201ENST00000437528 223 ntBASIC17.46■□□□□ 0.39
CIITAP33076 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.46■□□□□ 0.39
CIITAP33076 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CIITAP33076 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CIITAP33076 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 AC022137.2-201ENST00000503482 481 ntBASIC17.46■□□□□ 0.39
CIITAP33076 USP32P1-208ENST00000506594 1164 ntBASIC17.46■□□□□ 0.39
CIITAP33076 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC17.46■□□□□ 0.39
CIITAP33076 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 AC106886.1-201ENST00000568660 600 ntBASIC17.46■□□□□ 0.39
CIITAP33076 INO80C-210ENST00000590757 595 ntTSL 2 BASIC17.46■□□□□ 0.39
CIITAP33076 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.46■□□□□ 0.39
CIITAP33076 BX539320.1-201ENST00000623759 877 ntBASIC17.46■□□□□ 0.39
CIITAP33076 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.46■□□□□ 0.39
CIITAP33076 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CIITAP33076 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CIITAP33076 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC17.46■□□□□ 0.39
CIITAP33076 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.46■□□□□ 0.39
CIITAP33076 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.46■□□□□ 0.39
CIITAP33076 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CIITAP33076 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CIITAP33076 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CIITAP33076 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC17.46■□□□□ 0.38
CIITAP33076 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.38
CIITAP33076 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CIITAP33076 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
CIITAP33076 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.46■□□□□ 0.38
CIITAP33076 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
CIITAP33076 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CIITAP33076 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CIITAP33076 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 STRN-202ENST00000379213 2254 ntTSL 5 BASIC17.45■□□□□ 0.38
CIITAP33076 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
CIITAP33076 C18orf15-201ENST00000623680 2534 ntBASIC17.45■□□□□ 0.38
CIITAP33076 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 NUS1P3-201ENST00000423502 862 ntBASIC17.45■□□□□ 0.38
CIITAP33076 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.45■□□□□ 0.38
CIITAP33076 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.45■□□□□ 0.38
CIITAP33076 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 AC008735.3-201ENST00000596646 500 ntBASIC17.45■□□□□ 0.38
CIITAP33076 ATF5-205ENST00000600336 682 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 AC239800.4-201ENST00000603712 296 ntBASIC17.45■□□□□ 0.38
CIITAP33076 AP005019.2-201ENST00000615104 511 ntBASIC17.45■□□□□ 0.38
CIITAP33076 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
CIITAP33076 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.45■□□□□ 0.38
CIITAP33076 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CIITAP33076 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.45■□□□□ 0.38
CIITAP33076 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.44■□□□□ 0.38
CIITAP33076 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.44■□□□□ 0.38
CIITAP33076 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CIITAP33076 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms