Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 STK16-203ENST00000409516 895 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 AC004837.1-201ENST00000446267 564 ntBASIC15.74■□□□□ 0.11
VCANP13611 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VCANP13611 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC15.74■□□□□ 0.11
VCANP13611 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC15.74■□□□□ 0.11
VCANP13611 AC084752.1-201ENST00000509766 622 ntBASIC15.74■□□□□ 0.11
VCANP13611 DBP-202ENST00000593500 712 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 AC004466.2-201ENST00000614749 516 ntBASIC15.74■□□□□ 0.11
VCANP13611 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
VCANP13611 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 LINC02012-201ENST00000608206 1725 ntBASIC15.74■□□□□ 0.11
VCANP13611 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VCANP13611 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.74■□□□□ 0.11
VCANP13611 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC15.73■□□□□ 0.11
VCANP13611 AC023906.1-201ENST00000486386 453 ntBASIC15.73■□□□□ 0.11
VCANP13611 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 AP005212.2-201ENST00000584979 510 ntBASIC15.73■□□□□ 0.11
VCANP13611 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
VCANP13611 PGR-209ENST00000617858 2816 ntTSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC15.73■□□□□ 0.11
VCANP13611 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.73■□□□□ 0.11
VCANP13611 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.73■□□□□ 0.11
VCANP13611 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 AC026470.1-201ENST00000478038 846 ntBASIC15.73■□□□□ 0.11
VCANP13611 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 MIR4313-201ENST00000580760 101 ntBASIC15.73■□□□□ 0.11
VCANP13611 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.73■□□□□ 0.11
VCANP13611 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.73■□□□□ 0.11
VCANP13611 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC15.73■□□□□ 0.11
VCANP13611 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC15.73■□□□□ 0.11
VCANP13611 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC15.73■□□□□ 0.11
VCANP13611 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
VCANP13611 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC15.73■□□□□ 0.11
VCANP13611 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 PGAM1P12-201ENST00000505622 748 ntBASIC15.72■□□□□ 0.11
VCANP13611 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.72■□□□□ 0.11
VCANP13611 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 AL136295.7-201ENST00000619226 1200 ntBASIC15.72■□□□□ 0.11
VCANP13611 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
VCANP13611 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.72■□□□□ 0.11
VCANP13611 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.72■□□□□ 0.11
VCANP13611 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
VCANP13611 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
VCANP13611 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 RBM4-207ENST00000506523 654 ntTSL 3 BASIC15.72■□□□□ 0.11
VCANP13611 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.72■□□□□ 0.11
VCANP13611 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms