Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 AL356585.2-201ENST00000625078 2396 ntBASIC11.81□□□□□ -0.52
HLA-DQA1P01909 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
HLA-DQA1P01909 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 COPS8-203ENST00000409334 794 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 PMS2P1-201ENST00000431037 1228 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 RN7SL606P-201ENST00000472779 293 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC104819.1-201ENST00000504587 486 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 CIB2-208ENST00000560618 804 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 REXO1L3P-201ENST00000622202 1288 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC152010.1-201ENST00000415779 2006 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SLC6A6P1-201ENST00000413933 1850 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC113367.3-201ENST00000508316 1912 ntBASIC11.8□□□□□ -0.52
HLA-DQA1P01909 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
HLA-DQA1P01909 AC233702.3-201ENST00000578656 1387 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 AC027612.1-201ENST00000445234 2395 ntBASIC11.79□□□□□ -0.52
HLA-DQA1P01909 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
HLA-DQA1P01909 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 154.2 ms