Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
VPS4BO75351 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VPS4BO75351 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
VPS4BO75351 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 SPCS2P4-201ENST00000436160 681 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 MEIS3P1-201ENST00000495167 958 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.36■□□□□ 0.05
VPS4BO75351 AC026150.2-201ENST00000564693 1156 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.36■□□□□ 0.05
VPS4BO75351 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS4BO75351 AL450472.2-201ENST00000603663 1156 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 AC009118.2-201ENST00000613275 655 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 MIR6080-201ENST00000617359 66 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 AC025048.6-201ENST00000634326 1161 ntBASIC15.36■□□□□ 0.05
VPS4BO75351 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.36■□□□□ 0.05
VPS4BO75351 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS4BO75351 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
VPS4BO75351 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.36■□□□□ 0.05
VPS4BO75351 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
VPS4BO75351 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 AC018892.3-201ENST00000623986 2499 ntBASIC15.35■□□□□ 0.05
VPS4BO75351 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 TK2-221ENST00000620035 5060 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS4BO75351 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS4BO75351 NME2P1-201ENST00000426182 414 ntBASIC15.35■□□□□ 0.05
VPS4BO75351 GPS2P2-201ENST00000430745 888 ntBASIC15.35■□□□□ 0.05
VPS4BO75351 RN7SL692P-201ENST00000464677 288 ntBASIC15.35■□□□□ 0.05
VPS4BO75351 AC097493.3-201ENST00000509725 367 ntBASIC15.35■□□□□ 0.05
VPS4BO75351 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS4BO75351 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
VPS4BO75351 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.35■□□□□ 0.05
VPS4BO75351 AC004233.3-201ENST00000607794 1269 ntBASIC15.35■□□□□ 0.05
VPS4BO75351 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
VPS4BO75351 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
VPS4BO75351 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS4BO75351 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS4BO75351 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
VPS4BO75351 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
VPS4BO75351 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
VPS4BO75351 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.35■□□□□ 0.05
VPS4BO75351 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
VPS4BO75351 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VPS4BO75351 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 GPI-205ENST00000586425 1799 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS4BO75351 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 AC007292.2-201ENST00000593524 1812 ntBASIC15.34■□□□□ 0.05
VPS4BO75351 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
VPS4BO75351 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms